Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g0003 ATGAGTGGCGGGACTATGGTTTTGGTTCATCCACAAGCCAGTACTTTCTTCGTCTTGTCTTCGTTTTCTTCCTCCTCTTTTGTTAGCGGCTCACTCCAGTTTCGTCGTTCTCTCTCTGCAAGTTTAACCCCACCTAGAATCAGCGCCAGGGAACATCCTTGTTTCTTCTGCAATTCTTCGTGGAAAGAGCTCGCTGGAGTGTTACTGTTCTCGGCGTTTCCTTTCGCCGCCGTGAAAGCTATAGCTAATAGTCCTCTAGGGGAATCACTTCAGAGGAAACTGGAGAAGAGAAAGAAATTCGCTGTTGAAAACTCTTCTAAATTCATGGCCTTGGCCCAGGAGGCCCGAAAGCGGAGCTTTTGGTATGGAGAAGATCGGCCTGGTTGGCTTGGTCCTATTTCATATGAATATCCATCATATCTTACTGGGGAACTTCCTGGAGATTATGGCTTTGACATTGCCGGGCTCGGCAAGGATCCTGACACACTGCAGAAATACTTCAACTTTGAGATATTGCATGCTCGGTGGGCAATGCTTGCATCTATTGGTGCTCTTATTCCTGAAATATTGGACCTATTGGGAGCTGTTCACTTTGTCGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTGGGCATCCAAGGTCTTCACTTAGCTGGTAGCCAAGGAGTGCTTGTGATTGCTATTTGCCAAGCCCTCCTTATGGTTGGACCAGAATATGCTAGATACTGTGGGACTGAGGCATTGGAGCCTCTAGGAATATTTCTGCCTGGTGATATAAATTATCCTGGTGGAGCATTGTTTGATCCCTTAAATTTGTCCAAAGATCCTGAAGCTTTTGAGGAGTTGAAGGTGAAAGAAATTAAAAATGGACGCCTAGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAAGCAGCTCTGACGGGTAAAGGTCCTGTGCAGAACTTTCTTGACCACATCTCTGATCCTGTCCATAATAACTTGATTGCTTCACTAAGCTTAGTGAAAATACTCAATTAA 1044 0.455 MSGGTMVLVHPQASTFFVLSSFSSSSFVSGSLQFRRSLSASLTPPRISAREHPCFFCNSSWKELAGVLLFSAFPFAAVKAIANSPLGESLQRKLEKRKKFAVENSSKFMALAQEARKRSFWYGEDRPGWLGPISYEYPSYLTGELPGDYGFDIAGLGKDPDTLQKYFNFEILHARWAMLASIGALIPEILDLLGAVHFVEPVWWRVGYSKLKGDTLDYLGIQGLHLAGSQGVLVIAICQALLMVGPEYARYCGTEALEPLGIFLPGDINYPGGALFDPLNLSKDPEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNFLDHISDPVHNNLIASLSLVKILN* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g0003 347 SUPERFAMILY Chlorophyll a-b binding protein 120 339 - -
Ahy16g0003 347 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 7, CHLOROPLASTIC 58 336 - -
Ahy16g0003 347 Pfam Chlorophyll A-B binding protein 138 313 IPR022796 -
Ahy16g0003 347 Gene3D Chlorophyll a/b binding protein domain 128 339 - -
Ahy16g0003 347 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 58 336 IPR001344 GO:0009765|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g0003 Ahy-Chr16 38593 42112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g0003 56 341 Chloroplast and Mitochondria Gene Families AT1G76570 78.322 1.67e-171 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g0003 K14172 - gmx:100786260 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g0003 16 38593 42112 Ahy16g0003 16 38593 42112 ECH
Ahy16g0003 16 38593 42112 Ahy6g1343 6 20510057 20515102 hybridization