Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3798 ATGTCTTTTACAAGCGCATCATTTATGGTGCGCAGATACTATCTATCATTGCTTTGTCACTTTGAGCAAGCGTATTACTTTCGGAAACAAGTCCCTCCTTCCTCAACACCTGATCCTGCAAATAGGAGTCTCGTTGATAGCTTCACACCCTTTGGTGAAGCCGGTAAAACACAGCAGCTTGGTTCTGTGGTGCCTGGAACAATTGATGGGAAGTTTGATGGTGGTTATATAGTTACAGTGAATCTGGGTTCTGAACAGGTGAAAGGTATTCTATACCATGTTCCCATCAGTTTGTCCCAGAGTTCTAATACTGTTGGTGTCCATGGTTCACGGAAACGAAAGAAATCTAGATTGGCATTAGGCGATCCATCTCGGCCGAAGTCAAACAAGAGTGGCTACTATTTCTTCTTTGCTGAGAATTATGCCAGGTTGAGGCCCTTATTCCATGGTGAAGAGAGAGCGATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTAACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGCTGAGAGATAAGGAAAGATACAAGACTGAATTGTTGGAGCACAAGTCGTCCAATAATTGA 594 0.4293 MSFTSASFMVRRYYLSLLCHFEQAYYFRKQVPPSSTPDPANRSLVDSFTPFGEAGKTQQLGSVVPGTIDGKFDGGYIVTVNLGSEQVKGILYHVPISLSQSSNTVGVHGSRKRKKSRLALGDPSRPKSNKSGYYFFFAENYARLRPLFHGEERAISKRIGFLWNNLTEAERQVYQEKGLRDKERYKTELLEHKSSNN* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3798 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 126 193 IPR009071 -
Ahy15g3798 197 Gene3D High mobility group box domain 108 197 IPR036910 -
Ahy15g3798 197 CDD HMGB-UBF_HMG-box 126 189 - -
Ahy15g3798 197 MobiDBLite consensus disorder prediction 103 126 - -
Ahy15g3798 197 SMART hmgende2 125 194 IPR009071 -
Ahy15g3798 197 Pfam HMG (high mobility group) box 126 188 IPR009071 -
Ahy15g3798 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 2 197 - -
Ahy15g3798 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 2 197 - -
Ahy15g3798 197 SUPERFAMILY HMG-box 123 194 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3798 Ahy-Chr15 160584098 160585681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3798 2 196 ARID Transcription Factor Family AT3G13350 50.246 6.78e-66 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Ahy15g3798 HMG_box 2.40E-08 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3798 - - adu:107491521 382.874