Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3788 ATGGCGTCTTCGTCCAGTAGCGGATTGACGTTCAAGGTGCATCCATTGGTGATCGTGAACATCTCCGACCACTACACTCGCGTCAAGTCGCAGCTCAACCCTCCCAATTCCAATGCTTCTTCCAATTCCTCTGCTCCGCGGGTCTACGGTGGCGTCATAGGGGTCCAGAAGGGTCGCACCGTCGAGATCTTCAACAGCTTCGAGCTCCTCTACGACTCTTCCACCCACTCCCTCGACCGCGCCTTCCTCGAGAAGAAGCAGGAGCTCTACAAGAAGGTCTTCCCTCACTTCTATATCCTCGGTTGGTACTCCACCGGCACCGACGCCCACGAATCCGACATGCACATTCACAAAGCTTTGATGGATATCAATGAGAGTCCCGTTTATGTTCTCCTGAACCCTTCCATCAATCATTCTCAGAGGGACCTCCCTGTCACTATTTTTGAAAGCGAACTGCATGTTATAGACGGAATTCCCCAACTTATTTTTGTTCGCTCCAGCTATACTATTGAGACTGTCGAAGCTGAACGGATCTCAGTGGACCATGTTGCTCATCTTAAGCCGTCGGATGGTGGTTCTGCGGCCACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGCAGAATTAAGGTGCTGCATCACTATTTGCTCGCAATGCAAAAAGGTGATGTTCCTTGTGAAAATTCACTGTTAAGACAAGTGTCAAGTCTCCTGAGAAGATTGCCTGCTATTGAATCTGGGAAATTTCAAGATGATTTCTTAATGGAATACAACGACACTTTATTGATTAGCTACCTTGCAATGTTGACCAACTGCTCAAGTACAATGAATGAATTGGTGGACAAATTCAATACTGCATACGACAGGCATAGCAGAAGGGGTGGACGAACTGCTTTTATGTGA 924 0.4751 MASSSSSGLTFKVHPLVIVNISDHYTRVKSQLNPPNSNASSNSSAPRVYGGVIGVQKGRTVEIFNSFELLYDSSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGTDAHESDMHIHKALMDINESPVYVLLNPSINHSQRDLPVTIFESELHVIDGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSTMNELVDKFNTAYDRHSRRGGRTAFM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3788 307 CDD MPN_CSN6 9 303 IPR033859 GO:0000338|GO:0008180
Ahy15g3788 307 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 126 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ahy15g3788 307 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 2 307 - -
Ahy15g3788 307 SMART pad1_6 10 153 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ahy15g3788 307 ProSiteProfiles MPN domain profile. 11 154 IPR037518 -
Ahy15g3788 307 Pfam Maintenance of mitochondrial structure and function 174 288 IPR024969 -
Ahy15g3788 307 Gene3D Cytidine Deaminase, domain 2 1 188 - -
Ahy15g3788 307 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 6A 2 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3788 Ahy-Chr15 160515758 160518939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3788 2 258 Eukaryotic Initiation Factors Gene Family AT2G39990 23.282 2.74e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3788 K12179 - gmx:100797079 554.673