Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3447 ATGGACCTTGATGGGGGCAACAAGCGCGTGTACCAACGATTAGGTGGACCCTCAGGGGACTCGAAGCATCAGAAAGTGTGCTATCACTGGCAAGCTGGCAAGTGCAATCGTCACCCATGCCCTTTTCTTCATAGCGAGTTGCCAACTCCCAATGTTAATGGTACCTCTTCGAAGAGGCCTCATGGTTCTGCTGACAATTCCGGATTTTCGGGACATCGCCGGAACCCTCACTTCAACAACACATGGGGTCGCGGTGGTGGTCGTGGTGGCGGTCGCGGTGCCAGTGGTGGAGTTGTTGGTGGTGACATGAGTGTAGTTAGGAAGGCTGATAAAGTTTGTAATTATTGGATTCAGGGGAATTGTAATTTTGGTGAGAGGTGTAAGTTCCTTCACTCTTGGAATACAGGGGATGGGTTTTCTATGTTGACACAGCTTGAAGGCCATCAGAAGTGTGTAGCTGTGATCAATCTTGGTGGTGAAGTAGGTTGCATGATCAGTGAAGGTCCTTGGGTTTTTGTAGGCATACCTAATTTTGTGAAGGTCTGGAACACACAAAATTCAATGGAACTAAGTCTAAATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGAATAATGATATGCTCTTTGCTGGTACACAGGATGGATCTATATTGGTATGGAAGTTCAATGTAGTTGCTAACTGCTTTGAGCCAGCTGCATCACTTAAGGGTCACACGCGTGGTGTTGTTTCATTAGTTGTTGGAGCTAATAGACTCTACTCTGGTTCAATGGACAATACAATAAGAGTCTGGAATCTTGAAAATTTGGAGTGTTTACAGACACTAACAGACCACACGTCTGTCGTGATGTCTGTTCTCTGTTGGGAGCAGTTCCTTTTGTCTTGTTCATTGGACAAAACAGTAAAGGTGTGGTATGCTACTGAAAGTGGAAACTTGGAAGTGACATATACTCACAACGAAGAGCATGGAATAGTTACTCTCTGTGGAATGCACGATGCACATGGCAAGCCCATTTTGTTGTGCTCTTGCAATGATAATACTGTGCGCCTCTATGACCTGCCATCATTTGCAGAGAGAGGCAAGATATTTACAAAACAAGAGGTACGGGCAATTCAGGCAGGGCCTAATGGCTTATTCTTCACTGGTGATGGAACTGGTCAAGTCAAAGTGTGGAATTGGACACCGGAGCCAATACCTACCATTCAATAA 1212 0.453 MDLDGGNKRVYQRLGGPSGDSKHQKVCYHWQAGKCNRHPCPFLHSELPTPNVNGTSSKRPHGSADNSGFSGHRRNPHFNNTWGRGGGRGGGRGASGGVVGGDMSVVRKADKVCNYWIQGNCNFGERCKFLHSWNTGDGFSMLTQLEGHQKCVAVINLGGEVGCMISEGPWVFVGIPNFVKVWNTQNSMELSLNGPVGQVYALVVNNDMLFAGTQDGSILVWKFNVVANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTIRVWNLENLECLQTLTDHTSVVMSVLCWEQFLLSCSLDKTVKVWYATESGNLEVTYTHNEEHGIVTLCGMHDAHGKPILLCSCNDNTVRLYDLPSFAERGKIFTKQEVRAIQAGPNGLFFTGDGTGQVKVWNWTPEPIPTIQ* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3447 403 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 152 - -
Ahy15g3447 403 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 150 398 - -
Ahy15g3447 403 SUPERFAMILY WD40 repeat-like 133 396 IPR036322 GO:0005515
Ahy15g3447 403 ProSiteProfiles Zinc finger C3H1-type profile. 107 134 IPR000571 GO:0046872
Ahy15g3447 403 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 269 - -
Ahy15g3447 403 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Ahy15g3447 403 SUPERFAMILY CCCH zinc finger 108 132 IPR036855 GO:0046872
Ahy15g3447 403 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Ahy15g3447 403 Gene3D - 7 56 - -
Ahy15g3447 403 MobiDBLite consensus disorder prediction 51 77 - -
Ahy15g3447 403 Gene3D - 103 159 - -
Ahy15g3447 403 PRINTS G protein beta WD-40 repeat signature 209 223 IPR020472 -
Ahy15g3447 403 PRINTS G protein beta WD-40 repeat signature 253 267 IPR020472 -
Ahy15g3447 403 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Ahy15g3447 403 SMART c3hfinal6 109 133 IPR000571 GO:0046872
Ahy15g3447 403 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Ahy15g3447 403 MobiDBLite consensus disorder prediction 1 23 - -
Ahy15g3447 403 Gene3D - 250 402 IPR015943 GO:0005515
Ahy15g3447 403 PANTHER - 1 152 IPR044715 -
Ahy15g3447 403 Pfam WD domain, G-beta repeat 233 266 IPR001680 GO:0005515
Ahy15g3447 403 Pfam WD domain, G-beta repeat 271 305 IPR001680 GO:0005515
Ahy15g3447 403 SMART WD40_4 229 266 IPR001680 GO:0005515
Ahy15g3447 403 SMART WD40_4 185 222 IPR001680 GO:0005515
Ahy15g3447 403 SMART WD40_4 356 393 IPR001680 GO:0005515
Ahy15g3447 403 SMART WD40_4 310 353 IPR001680 GO:0005515
Ahy15g3447 403 SMART WD40_4 269 306 IPR001680 GO:0005515
Ahy15g3447 403 Gene3D - 171 249 IPR015943 GO:0005515
Ahy15g3447 403 MobiDBLite consensus disorder prediction 51 97 - -
Ahy15g3447 403 Pfam Zinc finger domain 113 131 - -
Ahy15g3447 403 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 275 IPR001680 GO:0005515
Ahy15g3447 403 PANTHER - 150 398 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3447 Ahy-Chr15 157050212 157054779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3447 208 393 Miscellaneous Gene Families AT5G08390 27.273 6.92e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ahy15g3447 WD40 0.0045 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3447 - - gmx:100775542 663.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3447 15 157050212 157054779 Ahy15g3447 15 157050212 157054779 ECH
Ahy15g3447 15 157050212 157054779 Ahy5g3043 5 111991781 111996267 hybridization