Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3396 ATGGAAAAAGAAGATATTTTTGGTTCCGGGCATGCGGTCAAGGCTGATGAGGCTCCAGGGGGCTTCCACGTGGCACCAAGAAGTGAAAATATACAGTTTTCTGCACCCACGGCGGAGCCACCGCAGCAGCCGGTGGTTCCGGCCACGGCTATGGTGGCAGTAACACCGGCGACAGGGACGGATGGGAAGAAGAAGAGGGGGAGGCCTAGAAAGTATGGACCGGACGGCAAGTTGACGCCGGAGGCAGCGGCGAAGGCGTTGTCTCCGATGCCGATATCGGCATCGATTCCGTTGACCGGAGAGTTCTCAGGGTGGAAAAAGGGTAGAGGAAAGGCTGTTGAATCAATGAAGAAGTCATATAAATTTTTTGAGTTTGAAAATGCTGGAGGACCAGGTAATGGAATTGCATACTCAGTTGGTGCCAACTTCACACCTCACATTCTTACAGTAAATGCTGGAGAGGATGTTACTATGAAGATTATGTCCTTTTCTCAGGACGGATCCCGCGCCATATGCATTCTCTCTGCCAATGGCACGATTTCAAATGTCACGCTCCGTCAACCAACTTCTTCCGGCGGCACTTTAACATATGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGCTCATATATGCCAACCGAGAACGGATTCACAAGGAGCAGATCTGGTGGGATGAGTGTTTCTTTGGCAGGTCCAGATGGTCGAGTAATGGGAGGAGGACTTGCCGGTTTGCTGGTAGCTGCAGGTCCTGTGCAGGTTGTTGTTGGTAGTTTCATTCCAGGTCACCAGTTAGAACATAAACAAAAGAAGCAAAGGGTGGAACATCATATATCATCAACTATATCGGCTCCACTTAATGTTCCTACTATTTCTGCTGAAGAAATGAAGATAACTCTTGGTGGAGTGAAGCCTTTCATGACACCCCCTTCGGTTCCTTTTCAAGTTGAAAACATTCCTCCTCCTCCTCCTGCGTTTGTCAACGGCCAATGTTCTCTGAACTCATCTGGTGACGACGATGATGAAGAAGATGCTTCTTTGCATGAGAAAGAATCTAATCCTAGTCTTTCAGATCCTGCTGGAGTTGCATGCTAA 1092 0.4863 MEKEDIFGSGHAVKADEAPGGFHVAPRSENIQFSAPTAEPPQQPVVPATAMVAVTPATGTDGKKKRGRPRKYGPDGKLTPEAAAKALSPMPISASIPLTGEFSGWKKGRGKAVESMKKSYKFFEFENAGGPGNGIAYSVGANFTPHILTVNAGEDVTMKIMSFSQDGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPTENGFTRSRSGGMSVSLAGPDGRVMGGGLAGLLVAAGPVQVVVGSFIPGHQLEHKQKKQRVEHHISSTISAPLNVPTISAEEMKITLGGVKPFMTPPSVPFQVENIPPPPPAFVNGQCSLNSSGDDDDEEDASLHEKESNPSLSDPAGVAC* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3396 363 ProSiteProfiles PPC domain profile profile. 140 283 IPR005175 -
Ahy15g3396 363 SUPERFAMILY AF0104/ALDC/Ptd012-like 142 261 - -
Ahy15g3396 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 7 322 IPR039605 GO:0003680
Ahy15g3396 363 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 7 322 - -
Ahy15g3396 363 MobiDBLite consensus disorder prediction 313 363 - -
Ahy15g3396 363 Pfam Plants and Prokaryotes Conserved (PCC) domain 145 258 IPR005175 -
Ahy15g3396 363 Gene3D - 145 279 - -
Ahy15g3396 363 MobiDBLite consensus disorder prediction 1 29 - -
Ahy15g3396 363 MobiDBLite consensus disorder prediction 55 77 - -
Ahy15g3396 363 CDD DUF296 144 258 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3396 Ahy-Chr15 156459542 156463949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3396 53 271 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 63.274 7.76e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3396 - - adu:107489679 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3396 15 156459542 156463949 Ahy15g3396 15 156459542 156463949 ECH
Ahy15g3396 15 156459542 156463949 Ahy5g1889 5 87085487 87089801 hybridization
Ahy15g3396 15 156459542 156463949 Ahy19g1938 19 112677926 112684475 PCT
Ahy15g3396 15 156459542 156463949 Ahy9g1575 9 85348917 85355287 PCT
Ahy19g1938 19 112677926 112684475 Ahy15g3396 15 156459542 156463949 PCT
Ahy9g1575 9 85348917 85355287 Ahy15g3396 15 156459542 156463949 PCT