Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3192 ATGTCTTCTTCCGGCGGCGTCACCTCCGGCAACCCCCAGCAATACTTCTGCCACCAGTGCAACCGCACAGTCTCCATCGTCCCTTCTTCCTCCGAGCTCCTCTGCCCTAATTGCAACGAAGGCTTCCTCGAAGAACTCGAAACTCCAATCCCTAACCCTAACCTCATCAATCCTTTCTTCTCTTTCAACTCTGACTTCGCCGGAGGTCCCTCCGCCGGAAACCTCCCATTCTTATTCTCCGGTGGTGGCGACGATCTATCCACGCTGCTTGGCGGCGGCGGCGTTGGTAACACCGCCGCCTCCGGCGAAGCCTTTAACCCCTTTGTGTTCCTCCAGAACTACCTCCAAACCCTAAGAGCTGGCGGCGCCAACGTCCAGTTCGTGATCGAGAATTCCGGCGACCCTACAACCGGAACGTTCCGGTTTCCCGGCGGGAACATGACTCACGGCGATTACTTCTTCGGCCCGGGGCTCGAGGAGCTGATCCAGCAGCTGGCGGAGAACGATCCGAATCGGTACGGGACGCCGCCAGCATCGAAGTCAGCCGTGGAGGGGCTGCCGGACGTGTCGGTCACAGAGGAGCTGCTGGAATCGGATTCTTCTCAGTGCGCGGTGTGCAAGGACACCTTCAAGCTTTGCGAATCGGCGAAGCAGATCCCGTGTAAGCACATATACCATTCCGATTGCATCTTGCCGTGGCTGGAACTGCATAATTCGTGCCCAGTTTGCCGTTACGAGTTGCCTACCGATGATCCGGATTACGAGCGGAGGGCTCAGCGTGGTGGGGTTCCTACGCCTGCCCCAGTGAACCGGTCTGTGGGGGCAGGCGGTTCAGCTGAATCCTCTGATGGAAGTGGTGGTGGTGTTGGCGGCGACAATGATGGCGGGGATAATAGGCAAACGTTGGAGAGGAGGGTGTTTAGGGTTTCTTTGCCGTGGCCGTTTAGGCAATTCGGTGGCTCTCCTGCGGAGACGAGCAATGTTGGGAACAACAGCAACAACAACAGTGGCGGCGGCAACAACAACAGTGGGCAATCGAATTCCGAAAGTAGGGGGAATCGGAATTTTGAGTCGGAGACGAGACAAGAAGATCTTGATTGA 1101 0.5722 MSSSGGVTSGNPQQYFCHQCNRTVSIVPSSSELLCPNCNEGFLEELETPIPNPNLINPFFSFNSDFAGGPSAGNLPFLFSGGGDDLSTLLGGGGVGNTAASGEAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPTTGTFRFPGGNMTHGDYFFGPGLEELIQQLAENDPNRYGTPPASKSAVEGLPDVSVTEELLESDSSQCAVCKDTFKLCESAKQIPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYERRAQRGGVPTPAPVNRSVGAGGSAESSDGSGGGVGGDNDGGDNRQTLERRVFRVSLPWPFRQFGGSPAETSNVGNNSNNNSGGGNNNSGQSNSESRGNRNFESETRQEDLD* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3192 366 SUPERFAMILY RING/U-box 187 250 - -
Ahy15g3192 366 MobiDBLite consensus disorder prediction 254 299 - -
Ahy15g3192 366 Pfam zinc-ribbon 13 46 IPR039525 GO:0061630
Ahy15g3192 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 250 IPR013083 -
Ahy15g3192 366 MobiDBLite consensus disorder prediction 313 366 - -
Ahy15g3192 366 MobiDBLite consensus disorder prediction 320 353 - -
Ahy15g3192 366 CDD RING-H2_RNF126_like 202 244 - -
Ahy15g3192 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 8 326 - -
Ahy15g3192 366 SMART ring_2 203 243 IPR001841 -
Ahy15g3192 366 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 326 - -
Ahy15g3192 366 Pfam Zinc finger, C3HC4 type (RING finger) 202 243 - -
Ahy15g3192 366 ProSiteProfiles Zinc finger RING-type profile. 203 244 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3192 Ahy-Chr15 153999615 154001852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3192 161 257 C3H Transcription Factor Family AT5G15820 56.701 5.73e-34 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3192 - K11982 gmx:100784504 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g3192 15 153999615 154001852 Ahy5g2078 5 90915213 90919332 hybridization