Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3110 ATGGACCAAAATCCCAACTTTGTTCCAGGCAAGATATATGTACGCGGTTTATCACCAACCACAAGATATGATGAAGTTAGGAAGTACTTTTCTAAATATGGCAATGTTGAGAAATGTACCGTCAGGGAGGACCGCAACCCGAGGCGGAATCTCAGAATCGGGTTTGTAACTTTTAAAGATGTCTCTGTGGTTGATAGAGTCATTGTGGAGAATCATGTTATTAATGGTTGTCAGGTTGGGGTTGAAAGATGCCTGGGGAAAAGGAATGTTGATGATACGTTTCCGGCAAACATACTTTATGTTTATGGAATTCCTGGAACTGTGCCTCCAGGTTTTTTGGCAAATTTCTTTAGTGATTATGGACAAGTCAGTTTATGCAGCATAGAAAGGGAAAAAGGCCATGGATCCATTTACTTTGAGTCTCCTCAGCAAGTTGATGATCTTATAGCACGTTTTGGGAATTGGATTAATTTTCATGGATTTAAATTGGAAATAAGCAAGCATCTCCAAAAAAGGGGACCAACGGTTCCATGTAGGGTAAGTGTTCCATTGATTGCTGCTAGAGCCGATCCTGGTCGAATGGCTGTTTCTAACCCGGCCGGGGGAAGCACGTCGAGTGGCAGGGTGGTTCAAAATCAGTTGTGGCAACCTTATGGAAGCTATGGTACTATGGTACCCTCTGTAGCATTTCCTAATTCCATTGGTTATGGACAATACTATCATGTTCCTATAGAAGAAGGAGGGCAAGGTGGTGGTGCAATGAGACAGAATTTTTCTACTTTTGCTGAAGCCAATGTCTCTCAAGGGGCTAGTAGTAGTGGAGGTGGTGCCTTGAATGCTGGCCATGATAATCCAAAGGTGTCAAAGGAATAG 873 0.4284 MDQNPNFVPGKIYVRGLSPTTRYDEVRKYFSKYGNVEKCTVREDRNPRRNLRIGFVTFKDVSVVDRVIVENHVINGCQVGVERCLGKRNVDDTFPANILYVYGIPGTVPPGFLANFFSDYGQVSLCSIEREKGHGSIYFESPQQVDDLIARFGNWINFHGFKLEISKHLQKRGPTVPCRVSVPLIAARADPGRMAVSNPAGGSTSSGRVVQNQLWQPYGSYGTMVPSVAFPNSIGYGQYYHVPIEEGGQGGGAMRQNFSTFAEANVSQGASSSGGGALNAGHDNPKVSKE* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3110 290 Gene3D - 10 88 IPR012677 -
Ahy15g3110 290 SMART rrm1_1 98 166 IPR000504 GO:0003723
Ahy15g3110 290 SMART rrm1_1 11 82 IPR000504 GO:0003723
Ahy15g3110 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 170 IPR000504 GO:0003723
Ahy15g3110 290 SUPERFAMILY RNA-binding domain, RBD 11 153 IPR035979 GO:0003676
Ahy15g3110 290 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 9 269 - -
Ahy15g3110 290 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 69 IPR000504 GO:0003723
Ahy15g3110 290 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Ahy15g3110 290 MobiDBLite consensus disorder prediction 265 290 - -
Ahy15g3110 290 CDD RRM_SF 99 166 - -
Ahy15g3110 290 Gene3D - 89 173 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3110 Ahy-Chr15 152737082 152738952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3110 12 201 Eukaryotic Initiation Factors Gene Family AT4G34110 22.326 4.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3110 K12741 - ahf:112801934 513.842