Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g3002 ATGCCGGGCTCGGCGTTCAGCCGGAAATGCAGGGAGGAGTGTGCGGCGGCGCTAGCGGAGTCAGCGTGGAATATGAGGGAGATTTCGAGGGCGAATGGTTCATTGTTGAGGTTCATGAAGGAGGAGATACATGGTGTTACTTCTCCAATGGTGTATTTGGCTATGTTGTTCAGCTGGTTCGCTTGGCATGTTGAGGACCATGACCTCCATAGCTTGAATTACCTTCACATGGGTTCTGGGAAGACCTGGTATGGCGTGCCGAGAGATGCAGCCATGGCGTTCGAAGATGTTGTTAGGGTTCATGGATATGGCTCTGAGATTAATCTTCTTGGTGAGTTTTCTTCACTTTTTGCAAGGGATAACAGAATGTTTGTGTTTTTGGACTTTGGATTTCAATTTGCATTGTTACTATCCCCAACTCCCAAATTTTAG 432 0.4745 MPGSAFSRKCREECAAALAESAWNMREISRANGSLLRFMKEEIHGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGSGKTWYGVPRDAAMAFEDVVRVHGYGSEINLLGEFSSLFARDNRMFVFLDFGFQFALLLSPTPKF* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g3002 143 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 1 116 - -
Ahy15g3002 143 SMART cupin_9 17 138 IPR003347 -
Ahy15g3002 143 SUPERFAMILY Clavaminate synthase-like 32 104 - -
Ahy15g3002 143 ProSiteProfiles JmjC domain profile. 17 143 IPR003347 -
Ahy15g3002 143 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 116 - -
Ahy15g3002 143 Pfam JmjC domain, hydroxylase 50 119 IPR003347 -
Ahy15g3002 143 Gene3D Cupin 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g3002 Ahy-Chr15 150778026 150778541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g3002 18 116 C2H2 Transcription Factor Family AT5G04240 59.596 3.19e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ahy15g3002 JmjC 2.70E-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g3002 - - ahf:114925382 298.901