LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g2850	ATGGCGAGTAGGCTGAAGGAAGATGAGAAGAACGAGCGCGTAATTCGCGGTCTTCTTAAGCTTGAACCAAATCGAAGATGCATTAACTGCAACAGCTTGGGACCACAATATGTCTGCACAAATTTCTGGACGTTTGTTTGCACAAACTGTAGTGGAATACACCGCGAATTCACCCATAGGGTTAAATCAATTTCAATGGCTAAATTTACTTCACAAGAAGTAAATGCTCTTCAAGGAGGAGGAAATCAGCGTGCAAAAGAAATTTATTTTAAAGAATGGGATGCACAACGTAATTCTTTTCCTGATAGCAGTAATGTTGATCGGCTCCGGGACTTTATTAAGCATGTTTATGTGGATAGAAGATTTACTGTAGAGAGGGCTAACGACAAACCACCAAGAGGAAAGGGTGACAATGATATCTATGAAAACAGGAGAAATGACATGTATCAGGGAGGGTCTAGAAGCCCTCCATACGAGGACACATATGAACGGCGTTATAGTGACAGGTCTAGTTCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGACTATGGGAGGAGTCCTGGTCGTCCTCCAATAGTCAATGATTGGCGTCGTGAAGATCGTAGAGTATCTGATGGGGATTATAAGGTAGAAAATCAATCTCCTGATCGAGCCAGAGATGTTGGTTCTTCCAGTCCACCTGTGGTCCGACCTGTTAGAGAGATATTGGGGGAAAACGTAGTACCTCTTCGGATAAGTGAACCCCCCAAACCAAACAGTGGTAAAGCTGCAGATGGCTCTGTGTTGACACAGCGAACCACATCTTCCAGTAGCTTGGCGTCCAGCAATGGGAATCCAGTGGATGTTAAGCCTGAGATTACAAAGAGCCTTATTGATTTCGATGCTGATCCTGAACCACCTGTTGCTCCGGCAATTCCTCCAGCCCAACAAACTAATGTGTCTCAACCTGTTGTGCAGCCAGAAAAATCCAGTGCTGATAATTGGGCCTCTTTTGATGTTGCTTCTCGAGCTACAGCAAATTCAACTCCAAGCCCTGTGAATGTAAATCCACTTGAATCTGTGTTGTCGCAATTGTCAGTGCCAGCTTCTTTACCTGCACATCTTTCTGGAGTCCAAGCTGGCCCAACTGTTGCAACAGCCATTCCTGCGGGCAATGCGACAACACCTGTAAGTGCCGGCGGTTTCTCAGCTTTTCCACCAAGTGGTTCTTCAGGACCATCTCCTGGACTGGCAACAGCACCGCCTCCTAGTAATGCAGGACAGTGGACTGGTCTGCAGCATCAGCAACCATTGTTTCAAGCTAATGCTACCCATTCCACACAACAATATAAACCACATGTGGGTGGAGCTGTAAACAATCAGCCATGGAATATATCCTCTGTGCCGACAGTTCAAGGGCATCAAAATACACCAATGCCACATGCATACCATGATGCTATAAACCCTGCCAATACAATCAGTGTTGTTTCACAACCTTCCACTGAAGTAAAATCAGGTGGAAGAAAAGAACTTCCTGAGGATCTATTCACTGTGAAATACCCATCCTATCCTGCGCCGGTTCCAGGTTGGCAAATGGGTCTTCCCCATGGCATGGGTCTTCCCCGTGGCATGGGTGTCTCAGTGCAATATAATAATGTGGTGCCCATGCCAAGTTTTCCGCAGCAATCAAAATCTGTCAATCCATTTGATGCCAGCGGTGAATCTCCCCAAGTTCAAGCACCAACTTTTCCTTCCATGTCATCTTTGCATGGTGCTCTGCCTAGTATGCCACCTTCAGGAGCAATTCATCCTGCAAGCATGGGTAATCCATCACACGCCTGGATCCCGCCCCCGTCATCATCATATGTATCTGTCCTGCCTGGACAAGCACAAACTCTTCCATCAGCTATGGGAGCAAGGAATTACATGGTACAACAAATGCCACCACCTAACTTGCCAATGCCAAGGCCAGAAGCTAGTAGTTTCGGAACTGGAGGAGCTGTTTTCGGCTTGTCAAATCCAGATCAGCAGCTAACTAATTCATTCTCCACCACTCCTGCCTCTAATCCCTTCCCTGCAGGGGGGAACCCATTCGGCTGA	2097	0.4659	MASRLKEDEKNERVIRGLLKLEPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTSQEVNALQGGGNQRAKEIYFKEWDAQRNSFPDSSNVDRLRDFIKHVYVDRRFTVERANDKPPRGKGDNDIYENRRNDMYQGGSRSPPYEDTYERRYSDRSSSGGRSPGYDQESRQYGDYGRSPGRPPIVNDWRREDRRVSDGDYKVENQSPDRARDVGSSSPPVVRPVREILGENVVPLRISEPPKPNSGKAADGSVLTQRTTSSSSLASSNGNPVDVKPEITKSLIDFDADPEPPVAPAIPPAQQTNVSQPVVQPEKSSADNWASFDVASRATANSTPSPVNVNPLESVLSQLSVPASLPAHLSGVQAGPTVATAIPAGNATTPVSAGGFSAFPPSGSSGPSPGLATAPPPSNAGQWTGLQHQQPLFQANATHSTQQYKPHVGGAVNNQPWNISSVPTVQGHQNTPMPHAYHDAINPANTISVVSQPSTEVKSGGRKELPEDLFTVKYPSYPAPVPGWQMGLPHGMGLPRGMGVSVQYNNVVPMPSFPQQSKSVNPFDASGESPQVQAPTFPSMSSLHGALPSMPPSGAIHPASMGNPSHAWIPPPSSSYVSVLPGQAQTLPSAMGARNYMVQQMPPPNLPMPRPEASSFGTGGAVFGLSNPDQQLTNSFSTTPASNPFPAGGNPFG*	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g2850	698	CDD	ArfGap_AGFG	12	124	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	673	690	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	198	222	-	-
	Ahy15g2850	698	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Ahy15g2850	698	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Ahy15g2850	698	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	313	331	-	-
	Ahy15g2850	698	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	124	IPR037278	-
	Ahy15g2850	698	SMART	arf_gap_3	12	131	IPR001164	GO:0005096
	Ahy15g2850	698	PANTHER	ARF GTPASE ACTIVATOR	1	698	-	-
	Ahy15g2850	698	PANTHER	ARFGAP/RECO-RELATED	1	698	IPR044820	GO:0005096
	Ahy15g2850	698	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	131	IPR001164	GO:0005096
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	402	425	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	127	331	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	673	698	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	127	144	-	-
	Ahy15g2850	698	MobiDBLite	consensus disorder prediction	263	288	-	-
	Ahy15g2850	698	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Ahy15g2850	698	Gene3D	Arf GTPase activating protein	2	131	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g2850	Ahy-Chr15	147094549	147101740	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy15g2850	12	122	C2H2 Transcription Factor Family	AT4G21160	29.839	1.26e-10	61.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy15g2850	15	147094549	147101740	Ahy18g2586	18	127999522	128005461	ECH
	Ahy15g2850	15	147094549	147101740	Ahy15g2850	15	147094549	147101740	ECH