Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2806 ATGAAAGGTTCAAGTAGTGGTGCATTGGGAGCAAAAACAGCAAGAGCGTGTGATAGCTGCCTAAGAGTAAGAGCAAGGTGGTTCTGTGCGGCAGATGATGCTTTCCTCTGCCATGGCTGCGATAACTTGGTTCACTCGGCCAACCAGTTAGCCAGCCGCCATGAAAGGGTTAGGCTCCAAACTTCATCTTCCTCCGCCAAGATAATAACAACTGCATGGCATAGTGGCTTCACGCGCAAGGCAAGAACCCCGCGTCATCACAACAAGAGCACTTTCTTGATGCAGCAGCAACAAGATGCTGAGAAAGAAGAAGAAGCGGTTTTCAATAACTACCACGGTTCCGTGTTTCTAGATCCTGTTGTGCCAGATCTTGGAAGCGAAGATATTTATGAGAGTGAGGAGCAGATTCTGTGCCGCGTGCCGGTGTTTCACCCGTTTGATGATGATTCTGTGCTTTGTAGTGTGCACAATAATGAAGTAGTGGAGGATGAAATGATGAAGAAGAAAAAGAAGAAGATGAAGAAGATGAACAATGATGATGGTGAAGAAGGAGAAGGTGAAGTACCGTGCACGTTTGGATTGGAGAATTTCTCTGATCTTGCTGATGTAGAAAACTTGCTCCATATTGAGGATGATTCAACCATGATTAAGGTTAAGGATGAATTACAACAAGTTACTAATGATGATGATGATTGTAATCTGGAGTCCATTCTTGATTGGAATATTGACACATCAGATCAATCAATGATGATGGCAGTAGTAGAACATGATCAAGAAGAGGAGGAAAATATTAATAAAGTGGAAATAATAAAGAAAGAGAAGTTTTTGAGGCTAAATTATGAAGAGGTTATTTCTGCTTGGGCAAGTCAAGGATCTCCATGGACTACAGGAAATCCACCTAAGTTCAACTTTGATGATTGTTGGCCCCATTACATGGGTTCAAGTGGTGGCGTGGATAATAATGTTGAATGGTGTCATGGGGAGGAAGTAAGAAACATGAGATGGCATCAAATAGGGGGAGTTGATGATGGGGGGAGAGAAGCAAGAGTATCAAGGTACCGAGAAAAGAGAAGAACGCGTTTGTTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGCTCAATGCTGAGAAGAGACCAAGAATGAAGGGTCGTTTTGTGAAGAGGACATCTTCATCATCATCATCCTTTGTTGAAGGAGCCATTACTACTACTTAA 1215 0.4255 MKGSSSGALGAKTARACDSCLRVRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTSSSSAKIITTAWHSGFTRKARTPRHHNKSTFLMQQQQDAEKEEEAVFNNYHGSVFLDPVVPDLGSEDIYESEEQILCRVPVFHPFDDDSVLCSVHNNEVVEDEMMKKKKKKMKKMNNDDGEEGEGEVPCTFGLENFSDLADVENLLHIEDDSTMIKVKDELQQVTNDDDDCNLESILDWNIDTSDQSMMMAVVEHDQEEEENINKVEIIKKEKFLRLNYEEVISAWASQGSPWTTGNPPKFNFDDCWPHYMGSSGGVDNNVEWCHGEEVRNMRWHQIGGVDDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSSSSSSFVEGAITTT* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2806 404 CDD Bbox1_BBX-like 16 59 - -
Ahy15g2806 404 Pfam CCT motif 346 388 IPR010402 GO:0005515
Ahy15g2806 404 ProSiteProfiles Zinc finger B-box type profile. 12 59 IPR000315 GO:0008270
Ahy15g2806 404 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 394 - -
Ahy15g2806 404 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 5 394 - -
Ahy15g2806 404 Pfam B-box zinc finger 14 57 IPR000315 GO:0008270
Ahy15g2806 404 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Ahy15g2806 404 SMART bboxneu5 12 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2806 Ahy-Chr15 145869239 145871441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2806 1 388 C2C2-CO-like Transcription Factor Family AT1G25440 41.403 4.19e-84 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Ahy15g2806 zf-B_box 1.80E-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2806 - - aip:107644315 773.467
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2806 15 145869239 145871441 Ahy5g2462 5 99250718 99252871 hybridization
Ahy13g2097 13 38661258 38663168 Ahy15g2806 15 145869239 145871441 PCT
Ahy3g1802 3 36438488 36440390 Ahy15g2806 15 145869239 145871441 PCT
Ahy15g2806 15 145869239 145871441 Ahy13g2097 13 38661258 38663168 PCT
Ahy15g2806 15 145869239 145871441 Ahy3g1802 3 36438488 36440390 PCT