Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2720 ATGGCTGTTGTAAGAGAACAAGATATGAAATGGAGAAGAGAGAGAAACAAGTTGAGGCAGCAGCAAGTCCCTTCCATGACCCAAACCACAAGCTGCAAATCCACCATATCCTCTCTCATCCTCTCCTCTTTCTCCAATGAAACCGCCACAAACAAGAACAAGAGTACATTCAGGGGACTTGGTTGCACTGCTGCTTCTGCATCATCACAACAAGTCTCAGTTCCTGCTGTGATTCGATCCTCTGCTGATTGGAAGAACACTAGGAAGAAGAACAAGTGCAGAAGGAGGAACACTGAAAAAAGCAGCATAACATGTCACCATAAGCATGCTTCTTCTTCTTCTTCTTCTTTTCAGGATGTATGGTGTGGCCCTGGAATTGGATTCGCATCAGATCATGCTTCTGCTTCTGTGGATTGTGTGGTGGCAAGGAAGAATGCTTCTTCAAGAAGGAACCTTGATGCTGTTGAGAGAGCAACACATAGGGAAGAGCGTCCTCCGCCTTATTTCGGAAGACGCACCATGAACACAGGCTTCTCTTTCATGGATGATGATCAAGGCATTTTCGTGGCACGCCCCGGATCGGAGTCTTTTTCTGCCGGTAGATACTATCGCCACGTTCCGCATCCCTCCTCCTCTGATGGTCTTGCTGAGATAATGATACTTCAAGGAAGACTATTAATGGGTGGAAGATTAAATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAATTGCTTGAGCTGGGTGAGAGAATTGGCCATGTTAACACTGGACTTAAAGAAGATGAGATGGGACACAACATAAGGAAGATTAAGCATGTAATTTCAAATAATTATTCAAAGCATCAAATAGACAAAAAGTGCAGCATTTGTCAGGAGGAGTATGAAGCTGATGATGAAATTGGGAGGCTAACTTGTGAACACAAGTATCACTTTCAGTGTATAAAACAATGGCTTGTCCATAAGAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTAGTTCGACACTGA 1032 0.4331 MAVVREQDMKWRRERNKLRQQQVPSMTQTTSCKSTISSLILSSFSNETATNKNKSTFRGLGCTAASASSQQVSVPAVIRSSADWKNTRKKNKCRRRNTEKSSITCHHKHASSSSSSFQDVWCGPGIGFASDHASASVDCVVARKNASSRRNLDAVERATHREERPPPYFGRRTMNTGFSFMDDDQGIFVARPGSESFSAGRYYRHVPHPSSSDGLAEIMILQGRLLMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGHNIRKIKHVISNNYSKHQIDKKCSICQEEYEADDEIGRLTCEHKYHFQCIKQWLVHKNFCPVCKQEVVVRH* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2720 343 CDD RING-H2_PA-TM-RING 295 336 - -
Ahy15g2720 343 Pfam Ring finger domain 294 336 IPR001841 -
Ahy15g2720 343 ProSiteProfiles Zinc finger RING-type profile. 295 336 IPR001841 -
Ahy15g2720 343 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 5 343 - -
Ahy15g2720 343 SMART ring_2 295 335 IPR001841 -
Ahy15g2720 343 MobiDBLite consensus disorder prediction 85 106 - -
Ahy15g2720 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 342 IPR013083 -
Ahy15g2720 343 SUPERFAMILY RING/U-box 294 341 - -
Ahy15g2720 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 5 343 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2720 Ahy-Chr15 143799894 143803734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2720 7 250 C3H Transcription Factor Family AT1G73760 38.007 3.87e-39 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2720 - - ahf:112751066 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2720 15 143799894 143803734 Ahy15g2720 15 143799894 143803734 ECH
Ahy15g2720 15 143799894 143803734 Ahy5g2527 5 100701688 100705480 hybridization