Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2694 ATGGCGAATGGGACGGATCTGGAGGAAATGGGCAGAGAACTCCAGTGCCCCATTTGTTTAAGTTTGCTGAATTCTCCGGCCAGTCTTCCATGCAGCCATGTCTTCTGCAACTTTTGTATCGTCAACTCTATGAAGTCGTCTTCTGATTGCCCTGTCTGTAAAATACCCTTCTTCCCTCGAGAGGTTCGCCTTAGTCCTCGTTTGCTCAACTTGGTTAACATTTACAAAAGAATGGAACGCTCTTCTGGTATGAACTTATTCCTCACCCAGAATCTGCACTACTATAAGTTTTCAGATGAAGAAACGCAATGTCAAGTTGATGCTGACTGTGGTAAAGAGGATGCTTATGATAAGAAGAGTTCCGATGCCCCATGTCGAGGGGATCAGAATTGCAACCTGCTACAACAACTGTTGTAG 417 0.4484 MANGTDLEEMGRELQCPICLSLLNSPASLPCSHVFCNFCIVNSMKSSSDCPVCKIPFFPREVRLSPRLLNLVNIYKRMERSSGMNLFLTQNLHYYKFSDEETQCQVDADCGKEDAYDKKSSDAPCRGDQNCNLLQQLL* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2694 138 Pfam Zinc finger, C3HC4 type (RING finger) 15 53 - -
Ahy15g2694 138 SUPERFAMILY RING/U-box 7 76 - -
Ahy15g2694 138 SMART ring_2 16 53 IPR001841 -
Ahy15g2694 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Ahy15g2694 138 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 6 120 IPR031099 GO:0006281|GO:0006974
Ahy15g2694 138 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN 6 120 - -
Ahy15g2694 138 ProSitePatterns Zinc finger RING-type signature. 31 40 IPR017907 -
Ahy15g2694 138 ProSiteProfiles Zinc finger RING-type profile. 16 54 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2694 Ahy-Chr15 143291086 143294666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2694 7 66 RAD5 or RAD16-like Gene Family AT5G22750 34.375 1.77e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2694 K10683 - aip:107644238 292.737