Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2626 ATGAATAACCGTGTTGATCTGGTGGACAAAATCACTCCGTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTGAAGTTGTGGTACCACAAGAATCCTGCTTTGGATCCTTCTCAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCCACCATTAGATATCAGCTTATATCAAAATTTTCCTTGTCTCTAAATGAAGGGGATGTGTACTTGATGACCCATTTTACAGTTGTACCGAACACTGGTTTGAACAGAGTGACAAAACATCGGTTCAGACTTTTGTTCCAATACAACACCTCTGTTGTTTCTGTGGTATCTCCAAGGATACCTCATTCGGGTCTGTGTTTTGCATCAATAGATGAAATTGATCAAATAACAAAGGACCATAATTTCCTCATTGACTTTTTTGGGATTATTACTGGTGTTCGAAAAGAAAGAGATGTGGAATCATATGGGAAGCTGGTCAAAGCAGTGGTGCTAGAAGTCTTTGCTGATGGCAAAAGGGTACAATGCAATGTGTTTGGAAATGCTTGTGATCTGTTAGAATATGATAAGTTACAAAAATATGCAAGATCTCCCCTGGTTGTCCTCGAGTCTTTTAAAATCAAAGCAATTGAAGGTGGGGTAATCCTACAGAATGTGATAAATGTCTCTAGGTTATTCATTAATCCTGACATTCCTGAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTAGCCAGATATGGATTCTCAAGACTTGTGACCAATGACCTTGGATACTTAGTTTCTAAAGTTGATGGTGATTATTTCAATCCCAAAGAGATCAGTAATATTCAAGATCTTCATTCAGATAATGGGGAAGTTATGGATGAACCAGATTGGTGGTACTACACATGTGTGTGTGGTCATGCCGTTGTTGAGCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAGCATGTTATGGTCAAATATGGGATTCGGGTAAAGATTTAG 1002 0.3872 MNNRVDLVDKITPWRESWKVHVKVVKLWYHKNPALDPSQNLLHMVLMDEKLHKIQATIRYQLISKFSLSLNEGDVYLMTHFTVVPNTGLNRVTKHRFRLLFQYNTSVVSVVSPRIPHSGLCFASIDEIDQITKDHNFLIDFFGIITGVRKERDVESYGKLVKAVVLEVFADGKRVQCNVFGNACDLLEYDKLQKYARSPLVVLESFKIKAIEGGVILQNVINVSRLFINPDIPESVEFLSRFSVARYGFSRLVTNDLGYLVSKVDGDYFNPKEISNIQDLHSDNGEVMDEPDWWYYTCVCGHAVVEHEDLYLCDACGSCVEHVMVKYGIRVKI* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2626 333 PANTHER REPLICATION FACTOR A 1, RFA1 12 293 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy15g2626 333 SUPERFAMILY Nucleic acid-binding proteins 7 110 IPR012340 -
Ahy15g2626 333 Gene3D - 7 111 IPR012340 -
Ahy15g2626 333 CDD RPA1_DBD_A_like 19 107 - -
Ahy15g2626 333 SUPERFAMILY Nucleic acid-binding proteins 122 244 IPR012340 -
Ahy15g2626 333 Gene3D - 114 248 IPR012340 -
Ahy15g2626 333 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Ahy15g2626 333 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 12 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2626 Ahy-Chr15 141873329 141876522 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2626 4 333 Core DNA Replication Machinery Family AT5G45400 21.680 1.38e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2626 - - aip:110268227 627.861