Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2488 ATGCAGCCGTCGTCAGAAGAAATTCACTCATTTGATACCCATATTGATATGGACGATATAAATATTTGTAATAGCTCAAGCAATTCTGCTACAGAAACTGAGTGCACGACTGAGGTCATAATTCATCCCACCATTTCTGATGAGGAGATTCCAAAAGTGGGGATGCTATTTGGAATCCTCGAAGAAGCACGCCAATTTTACTACAACTATGCCAATAAAGTGGGATTCGAGCCTCATATAAGAAACACTAACTTCAACAAGAATAGAAAAACACCCATTAACGAATCCATACAGTGCAATAGAGATGGATACCGAACAAAGAAGAATCCAGTAACCCAAAGGTCAAACACAGTCTCATCTGTACACTGTAAAGCTCGCATCTATGTGAAACTTGACACAGAGCTTAGAAAATGGATACTGTCGAAGGTAGAATTAGCTCACACGCATCGATGTGATCCCAGTTTGTCCTGGATGTTTAAGAAAAACAGGGAACTCACCATGCACGTTAAGGATGTCATTGAGCGCAACGACTAG 534 0.4064 MQPSSEEIHSFDTHIDMDDINICNSSSNSATETECTTEVIIHPTISDEEIPKVGMLFGILEEARQFYYNYANKVGFEPHIRNTNFNKNRKTPINESIQCNRDGYRTKKNPVTQRSNTVSSVHCKARIYVKLDTELRKWILSKVELAHTHRCDPSLSWMFKKNRELTMHVKDVIERND* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2488 177 Coils Coil 169 177 - -
Ahy15g2488 177 Pfam FAR1 DNA-binding domain 65 152 IPR004330 -
Ahy15g2488 177 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2488 Ahy-Chr15 137887694 137888501 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ahy15g2488 FAR1 5.00E-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2488 - - aip:107641081 355.14