Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2443 ATGGCTAATATTGCTAACAGCATCGTCTTTGGTGCACAACTTCCTCAATCTCCGTTTCCATCATTACCCGTTTCAAATTCTCTCATTTTCACCCAAAAACGCAAACTTTATCATAATTGCTCCAAAACCAACCGCATAACAATCCCTTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCATCACCGTTCAGCAGCAAGTGTTGTTGCTATGTGTTGGCGTGTCTCCCTCAACCACATGCTTCTGATTCATCATCATCATCAACTTCTTCTAATTCCAATAGCAAACCAAGTTCTTCTTCTGCTGCTCCTCCTTCAACTAAGCTCTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAAAGCTTGCGAAATGCATTTATGAATTTTGGTCAAGTTTTAGAAGTGAATTTGGTGATGGATAAAATTGCAAATAGACCAAGAGGGTTTGCATTTCTTAGATATGCAACTGAACAGGAATCTCTGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCCAAACCAAGATCAGAACTAAGGCAAAGACAAAACACTAGATACTAG 591 0.3959 MANIANSIVFGAQLPQSPFPSLPVSNSLIFTQKRKLYHNCSKTNRITIPFPSSSSSSSSSSPFSSKCCCYVLACLPQPHASDSSSSSTSSNSNSKPSSSSAAPPSTKLYVSGLSFRTTEESLRNAFMNFGQVLEVNLVMDKIANRPRGFAFLRYATEQESLKAIEGMHGKFLDGRVIFVEVAKPRSELRQRQNTRY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2443 196 SMART rrm1_1 107 180 IPR000504 GO:0003723
Ahy15g2443 196 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 51 194 - -
Ahy15g2443 196 Gene3D - 76 196 IPR012677 -
Ahy15g2443 196 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Ahy15g2443 196 MobiDBLite consensus disorder prediction 82 105 - -
Ahy15g2443 196 PANTHER NUCLEOLAR PROTEIN 8 51 194 - -
Ahy15g2443 196 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 177 IPR000504 GO:0003723
Ahy15g2443 196 SUPERFAMILY RNA-binding domain, RBD 95 194 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2443 Ahy-Chr15 136485735 136488773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2443 106 196 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 1.56e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2443 - K13195 ahf:112802436 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2443 15 136485735 136488773 Ahy5g2707 5 104846580 104849711 hybridization