Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2423 ATGAATGGAAAAGCCTCCGTCTCTAAGGAACTTAATGCCAAACACATCAAGGTTTTAGAGGGACTTGTTAGGCTACCTGACAATAGGGAATGTGCAGATTGCCGGAATAAGGCACCACGATGGGCAAGTGTGAACCTAGGAATTTTCATTTGCATGCAGTGTTCAGGAATTCACCGAAGTCTTGGAGTACACATATCACAGGTGCGGTCTACAACTTTGGATACATGGTTGCCAGAACAAGTGTCTTTCATGCAACTTATGGGTAATGTGAATGCCAATAAGCACTGGGAGGCTGAGCTGCCGACGAATTTTGACAGAAATCGATATGGAATCGACAAATTTATTCGCGCCAAGTATGTGGATAAAAAATGGGCTTCAAAACATGGTCTACAAGCAGCATCTGCAAAGTCATCTGAAACATTGAGGAATCATCAAAGGAATAGAAGATTGTCTCTTGAGGAAAGCATTCTTGTGGGCCACATGGCGCAAATTCAGCCGCCACAGCCGCAAGTAGCAAAATCTCATGAGTTAGAGATGGCCAAAGTTTCCAAACTATATACACTCGTGAAAATTATTGGTTACAAGGATAAGGATGAAGAGTGA 603 0.4279 MNGKASVSKELNAKHIKVLEGLVRLPDNRECADCRNKAPRWASVNLGIFICMQCSGIHRSLGVHISQVRSTTLDTWLPEQVSFMQLMGNVNANKHWEAELPTNFDRNRYGIDKFIRAKYVDKKWASKHGLQAASAKSSETLRNHQRNRRLSLEESILVGHMAQIQPPQPQVAKSHELEMAKVSKLYTLVKIIGYKDKDEE* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2423 200 SMART arf_gap_3 16 132 IPR001164 GO:0005096
Ahy15g2423 200 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Ahy15g2423 200 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Ahy15g2423 200 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Ahy15g2423 200 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 178 IPR044520 GO:0005096
Ahy15g2423 200 Gene3D Arf GTPase activating protein 2 132 IPR038508 -
Ahy15g2423 200 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Ahy15g2423 200 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 1 178 - -
Ahy15g2423 200 CDD ArfGap 19 119 - -
Ahy15g2423 200 SUPERFAMILY ArfGap/RecO-like zinc finger 17 126 IPR037278 -
Ahy15g2423 200 Pfam Putative GTPase activating protein for Arf 18 127 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2423 Ahy-Chr15 135552407 135554021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2423 22 138 C2H2 Transcription Factor Family AT4G05330 45.528 1.98e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2423 K12486 - gmx:100816853 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g2423 15 135552407 135554021 Ahy5g2724 5 105293641 105295329 hybridization