Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2330 ATGTCTATGATATTTTCGCGAAAAAACAGAGACATAGGTGGTAGCAAGCATGTAAGAAGGAACTTGAATGGTCAAAGGGCAGGAGTTACATGTGAGGCAACCAATAACATTGACAGATGTTGGAGGTGTGACCCCAATTGGGCAGATAATCGCCAAAAACTTGTAAATTGTGTTCAAGGTTTTGGAAGAAATACTACTGGAGGAAAGGGAGGTCCAATCTACATTGTTACTAGTCCTGCTGACAATGACATGGTTAATCCAAAACCAGGTACCCTTCGCCATGCAGTCACAAGAGATGGACCTTTGTGGATTATCTTTGCTCATAGCATGAATATTAGACTCAACCAAGAGCTCATGGTGTCTAGTAACAAGACCATCGACGGAAGAGGAGTTGATATCTACATTACTAAGGGTGCAGGCATCACCCTCCAATACGTCAATAATGTCATCATCCATGGAATCAAGATTCATGATATTGTTCCGGGCACCGGTGGACTTATTAGAGATTCTGAGAGTCATTTTGGATTTAGGACACGCAGTGATGGTGATGGAATCTCCATCTTTGGTGCCAGTAATATTTGGATTGACCATGTTTCCATGAGAAAATGCTCTGATGGTCTTATTGACGCCATTATGGGATCCACGGCTATTACCATCTCTAATAGTCATTTCACAGACCATAATGATGTGATGCTCTTTGGTGCCAATGACCAACACACAATTGATAAGGTGATGCAAATCACCCTAGTTTTCAACCACTTTGGCAAGAGATTAATCCAAAGAATGCCAAGGTGCAGATTTGGATTTGTTCATGTTGTCAACAACGATTATACTCATTGGGAAATGTATGCCATTGGTGGTAGCAGTAAGCCTACAATTATTAGTGAAGGAAATCGGTTCGTGGCTCCTGATAATAACAATGCTAAAGAGGTCACGAAGAGAGTAACCAATGATGATTGGAAGAATTGGCAATGGAGATCAATCAACGATGAGTTTGTTAATGGAGCATTTTTCGTACAATCTGGACCTGAACTAGTAAAGAGGCCATTCTCAAGCAAGGACATGATTGCAGGAAAGGATGGTTCATACGTGCAAAGACTTACTTCCTTTGCTGGCTCCCTTAAATGTAGAGTTGGTCAACCTTGCTAG 1149 0.4143 MSMIFSRKNRDIGGSKHVRRNLNGQRAGVTCEATNNIDRCWRCDPNWADNRQKLVNCVQGFGRNTTGGKGGPIYIVTSPADNDMVNPKPGTLRHAVTRDGPLWIIFAHSMNIRLNQELMVSSNKTIDGRGVDIYITKGAGITLQYVNNVIIHGIKIHDIVPGTGGLIRDSESHFGFRTRSDGDGISIFGASNIWIDHVSMRKCSDGLIDAIMGSTAITISNSHFTDHNDVMLFGANDQHTIDKVMQITLVFNHFGKRLIQRMPRCRFGFVHVVNNDYTHWEMYAIGGSSKPTIISEGNRFVAPDNNNAKEVTKRVTNDDWKNWQWRSINDEFVNGAFFVQSGPELVKRPFSSKDMIAGKDGSYVQRLTSFAGSLKCRVGQPC* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 57 74 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 81 106 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 117 133 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 181 202 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 323 347 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 353 376 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Ahy15g2330 382 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Ahy15g2330 382 PANTHER PECTATE LYASE 12 382 - -
Ahy15g2330 382 PANTHER PECTATE LYASE 18-RELATED 12 382 IPR045032 GO:0030570
Ahy15g2330 382 Pfam Pectate lyase 116 300 IPR002022 -
Ahy15g2330 382 Gene3D - 34 375 IPR012334 -
Ahy15g2330 382 SUPERFAMILY Pectin lyase-like 35 373 IPR011050 -
Ahy15g2330 382 SMART amb_all 109 306 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2330 Ahy-Chr15 132408883 132410418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2330 17 382 Polysaccharide Lyase AT1G14420 65.147 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2330 K01728 - gmx:100798579 591.652