Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g2096 ATGGAGCTAATTCAGAAAGAAAAAGCTAGGAAGACAACATTTGTAAAGAGAAAGAATGGATTAATGAAGAAAGTGGACGAGTTCTCCACTCTTTGTGGTGTTGATGTTTGTTTAATTATCTATGGCCCCAACTTTGATGGTCAAAGACCCACCAAACCTGAGACATGGCCCCAAGATACCGACCAGGTACGCCGAATCATTCAAAAGTACCATAACACAACAAGTGATAGACCTCCTAGGATCTATGATGTTGAAAAGTATTATAGAGATAGGGTTAAGAAAGTTGAAGGTGAGATTTCTAAGGTGCACAAGGAGAAGGAGAAGCCTAAGCCCAAGATCACGTATCCTACTTGGGATACCTCATTTAATGATCTTAGGGAAGACCAACTGATAATGTTTGCTGGCATTTTGGATTCTAAGATTGTGTCTTGCAATCAAAGAATCAACATGCTAAAGCAAGATCCCAAGGGAAAAGCAATAATGGTAGAATCAAAAGACAATGTTGATGAGAATGTTTTTGCTACTCTTTACTTGGCTTCATCAAACCCTAGTAGCTACCTTAATTTTATGCCAAACAAGTCTCAGCAAGCACAGTTTATTCCTCACCTTCCCATGAAACCCATTATTGATTATACCACCCAATTACCATTCTACCCTTCGCAATTAGGGGGAAGTTCATCACAATCTTCCACTCTTCATTTTGACCAAAATACTATGCAACTTATGGGAAAAAATGGGACTTTGGATTGGGAGCAACCAGTTGGTACTTTTAGCACTCATGATATACAAGTTCATTTTCTAAATTACACTGGAGATGGAAGCAACAACCAGAACTCTTCATCGCCATGCTATTACAAAGGGAATATACAATCTGTGCAGCCATATAGTTTTGCTCTACCTCAATATGAAGATGTGCCTCCTGAGTTTCAAGTTAATGGACTCTATGATACAAATGTGACATTAAGTTCAAATGTTCAACTACATGCATGA 990 0.3848 MELIQKEKARKTTFVKRKNGLMKKVDEFSTLCGVDVCLIIYGPNFDGQRPTKPETWPQDTDQVRRIIQKYHNTTSDRPPRIYDVEKYYRDRVKKVEGEISKVHKEKEKPKPKITYPTWDTSFNDLREDQLIMFAGILDSKIVSCNQRINMLKQDPKGKAIMVESKDNVDENVFATLYLASSNPSSYLNFMPNKSQQAQFIPHLPMKPIIDYTTQLPFYPSQLGGSSSQSSTLHFDQNTMQLMGKNGTLDWEQPVGTFSTHDIQVHFLNYTGDGSNNQNSSSPCYYKGNIQSVQPYSFALPQYEDVPPEFQVNGLYDTNVTLSSNVQLHA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g2096 329 PANTHER MADS BOX PROTEIN 1 211 - -
Ahy15g2096 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 4 44 IPR002100 GO:0003677|GO:0046983
Ahy15g2096 329 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 1 211 - -
Ahy15g2096 329 SUPERFAMILY SRF-like 1 91 IPR036879 GO:0003677|GO:0046983
Ahy15g2096 329 SMART madsneu2 1 53 IPR002100 GO:0003677|GO:0046983
Ahy15g2096 329 CDD MADS_SRF_like 1 71 IPR033897 GO:0000981|GO:0000987|GO:0045944
Ahy15g2096 329 ProSiteProfiles MADS-box domain profile. 1 44 IPR002100 GO:0003677|GO:0046983
Ahy15g2096 329 Gene3D - 6 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g2096 Ahy-Chr15 121101287 121102276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g2096 1 147 Type I MADS-box Gene Family AT5G55690 37.838 2.71e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy15g2096 SRF-TF 6.80E-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g2096 - - aip:107640879 641.728