Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1948 ATGTCTGTGCAGTCAAGGAGTGACAGCGTTAACACTTCTCTTTTTGACAAAAGGGAACACATAGAGAAGATGCATCGTACTTGCAATCTTCTCCGTAAAGTTCAGGTCCCTCCGGTGGGGTTATTTCCCAACTGTCTTGTGCAACAAAAAGTTCTTCATCCATTCCGGAAGCAGGTTGGTGGAACTATTTTGTCTGCAAAACTTGCAAAAGAAAGAGGATGGGCCATTAATAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAACAACCAGGTGCTGTTTGATCAGGGTACTTATGACAAGCTCCTCTCTAAAGCTCCCAAATTCAAGCTCATCACTCCTTCTATTCTCTCTGACTGTTTGAGGAAAAACCCATCTATCATATGCTTATGTTGCCCAAGAGAGTGGACAGCAAATGGGCCCATAGATAAGAACTAG 438 0.4361 MSVQSRSDSVNTSLFDKREHIEKMHRTCNLLRKVQVPPVGLFPNCLVQQKVLHPFRKQVGGTILSAKLAKERGWAINKWSKGKQKEKVNNQVLFDQGTYDKLLSKAPKFKLITPSILSDCLRKNPSIICLCCPREWTANGPIDKN* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1948 145 Pfam S25 ribosomal protein 77 123 IPR004977 -
Ahy15g1948 145 PANTHER 40S RIBOSOMAL PROTEIN S25 42 127 IPR004977 -
Ahy15g1948 145 PANTHER RIBOSOMAL PROTEIN S25 42 127 - -
Ahy15g1948 145 Gene3D - 75 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1948 Ahy-Chr15 101222754 101225993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1948 85 142 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 70.690 5.49e-19 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1948 K02975 K11418 aip:107618240 233.417