Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1905 ATGGAACCTTGGAGTTATGTTACTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTGAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTTGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTTTCTTGGGGAAGAAGAATCCGAATCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCACGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAAAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTGACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCATTTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAACGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAGGCAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAATCTTCCTTACAGAAGAGGCCACAATTTTCATTTCCAGACATATTTCGATGTGGCACCCTTTTCCCTGCAAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAATTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCGTCGTGCCACTCAGAAGAAAATCCTGTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCATTAGTGATGACATTTGTCAAGCATCAGACTTATTCAATGTCAAACAACATTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTCGGTAAAGTGGGAAAATGAGGACTCTTGTTTCCCAGCATTGTAA 1398 0.4242 MEPWSYVTDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGLNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSFLGEEESESKHLSSLGELKAHDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCDMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSRQHKILHSHQGARYMESSLQKRPQFSFPDIFRCGTLFPAKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSCHSEENPVASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRAISDDICQASDLFNVKQHCSPLEHGSTVDLFQLSSNLERVEQKRNSVSVKWENEDSCFPAL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1905 465 Pfam SBP domain 173 246 IPR004333 GO:0003677
Ahy15g1905 465 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Ahy15g1905 465 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
Ahy15g1905 465 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Ahy15g1905 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 446 IPR044817 GO:0003677
Ahy15g1905 465 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 56 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1905 Ahy-Chr15 88114181 88118501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1905 1 464 SBP-box Gene Family AT1G69170 33.740 6.63e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ahy15g1905 SBP 7.80E-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1905 - - adu:107489502 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1905 15 88114181 88118501 Ahy15g1905 15 88114181 88118501 ECH