Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1853 ATGTTAAATGTTGATGTGATTGGGAACAAGAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTCGGCGAACCGGGTTACCCAGTTATGTTTACTGGTCCATTTCGTGAGAATGTGAATGCACTTCTTGAATATGCGAATTTGGAGAGTAACTTGGGAATGGGAATGCCAATGTGGTCTTTTCAGCTTGAAGTTCATCACCACCCTCCTTTGCATATTTTCTTGTTTGTGATTGAAGAACCAATTGAAGCTTCTTTGAATCGCCACTGCAAGCATTGTCAATATGTTGGATGGGGCCACCATTTCATTTGCAACAAGAAGTATCATTTCGTATTACCCTCGAAGGAGGCATTGGCTACATGCTCGAGCTGTGAAGGGTGCTGTGATGCTATTGCCACAATGAACAACAACAACAACAACAATAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATATGATGCATGGTGTTTTTCACTCTAATGGATTCGGCCATTTGCTATGTGTCAATGGCTTGGAAACCGGTTCCAATTTGGCTGGCAACCAGATCATGGACTTTTGGAATCGTTTGTGCATTGGATTGCAAGCAAGGAAAGTGAGTTTGAATGACACTGCACAGAAAAGAGGCATGGAACTTAGACTTATAAATGGAATAGCATATAGTGAGCCATGGTTTGGTCGCTGGGGCTACAAATTTGGAAGAGGTTCCTTTGGTGTGACACAATCCATGTACCAAAAAGCCATAGAAGCAATAAGGAGCATGCCACTCTACTTGCTCATACACCACATTGGCGCCAACAATTTCAACCACCACGAAGTGCCCGTCATTTTCTCACGCTACCAAACCCTGTCCGGCCAATCGCTAGTCACACTCGGCGACTTATTTCGCTACATGCTCGAGCTAAAGTCGCGCCTCCCGCGGGAGACGCGAGTTATTGGTAACAATAATTATACTTGTTCCTACAACAACACTAGTAGTACTAGTGCCAGTGCATTGGTTGAGTCCAATAATAATTGCCGTTGGTCACCTAAGAGGATTGAAATGGCAACAAGGGTAATTGTTGAGGCATTGAAGAGAACAGAGTTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCCGCACGTGCTTACATTGGTGACACTGGTTTATTGGATTTTGTGCTAAAGTCACTAGGGAATCATGTTGTTGGGAACTACTTGGTACGTAGGAGCTTAAATCCTGTTACCAAAGTTTTGGAGTATTGCTTAGAAGACATTTCCAATCATGTTTACCATAATTGCAATGAAGGTAGTTTGGCCATCAATAATAGTAATAGTAACAATAATAATAAAATTAAGGATAAGTACAAGATTTCAAGGGCTCAACTTATGAAGGACATGCTTTATTTGTATAAGTACATCCTAATTGACCCTAAACCAATGATGGGGTTGGAGTTTCTCTCAGCCATACCGTTGGCGGCTAGGATAATTCTCGACACCAAGTTTCTCGTCAAAGACTACTCTGGCGAGGTTCCCACTTTTGGAGTTGAGTTAGGCTCGGATGGAAAACTGAACCTTTATTGCACAATTTTGTTGAGGAACAATTCATGCATTGATGAGGAGTTCTTGAGTAAGGCTATGCCACCCTATGAGTGCATCACTTTGGGTAGCAATGCTACAATCAATGAATTGAAGTTAGAAGTTGAGAGGAATTTTAGGGAAATTTATTGGGGATTAAGGGGATTTGTGGTAGAATCAATTGGGAATTTTAGTGCCAATAATATTATTAGTAATAATGGGAAAGATATGGTTTTGGGGCTAATTGAAGTGATGGGTGGGAAAATAGTGTTAGAGGGTTGGATTGGTGAAATAATTGGAATGATGAATAACAACATGATGATTGGCCAAATGTGTGAGAATGATCCAAAGAATGGGATTGTGGAGTGCACTTGTGGAACAAAAGAAGATGATGGAGAGAGGTTGGTGTGTTGTGATATTTGTGAAACTTGGCAGCATACAAGGTGTGTTCGAATTCCAAATGATGAAGAAATTCCTCACATTTTTCTTTGCAAAAGGTGTGAGCAAGAAATTGTTATGTTCCCTTCATTGCCATAA 2109 0.4078 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMFTGPFRENVNALLEYANLESNLGMGMPMWSFQLEVHHHPPLHIFLFVIEEPIEASLNRHCKHCQYVGWGHHFICNKKYHFVLPSKEALATCSSCEGCCDAIATMNNNNNNNNNNGKSKLIELQGHMMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCIGLQARKVSLNDTAQKRGMELRLINGIAYSEPWFGRWGYKFGRGSFGVTQSMYQKAIEAIRSMPLYLLIHHIGANNFNHHEVPVIFSRYQTLSGQSLVTLGDLFRYMLELKSRLPRETRVIGNNNYTCSYNNTSSTSASALVESNNNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNHVYHNCNEGSLAINNSNSNNNNKIKDKYKISRAQLMKDMLYLYKYILIDPKPMMGLEFLSAIPLAARIILDTKFLVKDYSGEVPTFGVELGSDGKLNLYCTILLRNNSCIDEEFLSKAMPPYECITLGSNATINELKLEVERNFREIYWGLRGFVVESIGNFSANNIISNNGKDMVLGLIEVMGGKIVLEGWIGEIIGMMNNNMMIGQMCENDPKNGIVECTCGTKEDDGERLVCCDICETWQHTRCVRIPNDEEIPHIFLCKRCEQEIVMFPSLP* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1853 702 SUPERFAMILY FYVE/PHD zinc finger 631 694 IPR011011 -
Ahy15g1853 702 ProSiteProfiles Zinc finger PHD-type profile. 644 694 IPR019787 -
Ahy15g1853 702 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 702 - -
Ahy15g1853 702 Pfam PHD-finger 647 693 IPR019787 -
Ahy15g1853 702 CDD PHD_MMD1_like 646 691 - -
Ahy15g1853 702 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 696 IPR013083 -
Ahy15g1853 702 ProSitePatterns Zinc finger PHD-type signature. 647 691 IPR019786 -
Ahy15g1853 702 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 702 - -
Ahy15g1853 702 SMART PHD_3 646 692 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1853 Ahy-Chr15 73447094 73451545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1853 10 702 PHD Transcription Factor Family AT5G22260 50.642 0.0 663
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Ahy15g1853 PHD 2.40E-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1853 - - adu:107489498 1373.22