Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1625 ATGAGTCACAAGAGAGACAAACCCTCTTACACTTCTTCCCGCCACGCCCCCTACCCGAAGCGCCGCCGCCCACCGCCGGAGCCCGTGCTTCAGGAGCCGGAGGACCGACCATCATCGAGGCCTGCGCCCCCGTCCGCGGTGGTCATTATGGGCCTTCCCAACGACTGCTCCGTCCTTGACCTCAAGTCCCGCTTCGAGATCTACGGCCCCATTGCTCGCATTCGCATCGACGGCGACGCCGTCGGATACGTCACCTACCGGACCAAGGACTCCGCCGACGCCGCTATCGCCGCCGGCGCCGACCCATCCTTTGGAATTACTCTTCACTCCAAAAAGGTTCAGGTGTTGTGGGCAACTGACCCTCTAGCCATGTGGAGGGAAGGAATTGGTAATAACAACAAGGACAAAGGATCAATGTCGAAGCTTGTGCGTGCTGAGGTACCTTTGAGAAGACATGGAAGGGGTAATAGACTTGCTTCAGCTATAGGCAATACCAGAACCAGTGTTGATAACGCAGGTAGCTTGGTTCTTGAAGTACCTTTCAAGGGAAGAGAAATTGTTGCTTATGATGATATCCTCTGA 582 0.5567 MSHKRDKPSYTSSRHAPYPKRRRPPPEPVLQEPEDRPSSRPAPPSAVVIMGLPNDCSVLDLKSRFEIYGPIARIRIDGDAVGYVTYRTKDSADAAIAAGADPSFGITLHSKKVQVLWATDPLAMWREGIGNNNKDKGSMSKLVRAEVPLRRHGRGNRLASAIGNTRTSVDNAGSLVLEVPFKGREIVAYDDIL* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1625 193 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 97 IPR000504 GO:0003723
Ahy15g1625 193 Gene3D - 1 122 IPR012677 -
Ahy15g1625 193 SUPERFAMILY RNA-binding domain, RBD 7 118 IPR035979 GO:0003676
Ahy15g1625 193 MobiDBLite consensus disorder prediction 20 34 - -
Ahy15g1625 193 CDD RRM_SF 47 89 - -
Ahy15g1625 193 SMART rrm1_1 46 116 IPR000504 GO:0003723
Ahy15g1625 193 MobiDBLite consensus disorder prediction 1 45 - -
Ahy15g1625 193 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1625 Ahy-Chr15 34630548 34632451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1625 1 193 Homeobox Transcription Factor Family AT1G27050 51.675 8.07e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1625 - - gmx:106797175 261.151