Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1406 ATGTCAACTTTGAATCAACTGTTTGATCTTCCAGAACAGATATGTTATGTCCAATGTGGATTCTGCACTACCATCTTGATGGTGAGTGTGCCATGCAGCAGCATGTCAATGGTGGTGACAGTGAGATGCGGACACTGCACAAGCCTTCTCTCTGTGAATATGATGAAAGCTTCTTTTGTCCCTTTACACCTCTTAGCTTCTCTTTCTACTCATCATCATCATCATTCAAAAGAAGAGGATGCAAACAACATCGCAACTAACAGTTCTTCATCCATAATGATGATGAACTACTCTTCTAATGATTGTGCAGAAGAGGATGTAACCACAATCAACAATGTTGTCAACAAACCACCGGAGAAAAGACAGCGAACTCCATCAGCTTATAACCGATTCATCAAAGAAGAGATTAAAAGGCTAAAGGCAGAAAACCCTGAAATGGCACACAAGGAGGCTTTCAGTACTGCTGCCAAAAATTGGGCCAATTTTCCACCAACTCAGTTAAACGGAGATGAAGAAATTTGCAATCAGAAAGAGCAATTTGCGGATCTGGACTCCCAAGTGGACCGTCATTCTCATTCTCATGAGAGCATCAACGAAGAAGGTGAAGGTTTCCATGGAAGAAAGATGCAAAGAAATTCCATCATGGCAAGGACACAACTTGAATGA 666 0.4144 MSTLNQLFDLPEQICYVQCGFCTTILMVSVPCSSMSMVVTVRCGHCTSLLSVNMMKASFVPLHLLASLSTHHHHHSKEEDANNIATNSSSSIMMMNYSSNDCAEEDVTTINNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPEMAHKEAFSTAAKNWANFPPTQLNGDEEICNQKEQFADLDSQVDRHSHSHESINEEGEGFHGRKMQRNSIMARTQLE* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1406 221 Pfam YABBY protein 11 166 IPR006780 GO:0007275
Ahy15g1406 221 MobiDBLite consensus disorder prediction 191 207 - -
Ahy15g1406 221 CDD HMGB-UBF_HMG-box 123 166 - -
Ahy15g1406 221 Gene3D High mobility group box domain 111 202 IPR036910 -
Ahy15g1406 221 PANTHER AXIAL REGULATOR YABBY 4 1 186 - -
Ahy15g1406 221 PANTHER PROTEIN YABBY 6-RELATED 1 186 IPR006780 GO:0007275
Ahy15g1406 221 MobiDBLite consensus disorder prediction 191 221 - -
Ahy15g1406 221 SUPERFAMILY HMG-box 111 165 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1406 Ahy-Chr15 24674623 24677919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1406 2 221 C2C2-YABBY Transcription Factor Family AT1G23420 54.978 4.89e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ahy15g1406 YABBY 2.20E-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1406 K25796 - gmx:100806755 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1406 15 24674623 24677919 Ahy15g1406 15 24674623 24677919 ECH
Ahy15g1406 15 24674623 24677919 Ahy3g3415 3 132936993 132939133 hybridization
Ahy5g1224 5 32961741 32964218 Ahy15g1406 15 24674623 24677919 PCT
Ahy15g1406 15 24674623 24677919 Ahy5g1224 5 32961741 32964218 PCT