Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1404 ATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACCCTTGAGGTGGAATCTTCCGACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAAGAAGGAATCCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGCACACTCGCCGATTACAACATCCAGAAAGAATCGACGCTCCATCTCGTCCTCCGCCTCCGCGGCGGCGCCAAGAAGAGGAAGAAGAAGACGTACACCAAGCCGAAGAAGATCAAGCACAAGCATAAGAAGGTGAAGCTCGCGATTCTCCAGTTCTACAAGATCGACGATACCGGTAAGGTTCAGAGGCTCAGGAAGGAGTGCCCTAACGCTGAGTGTGGCGCTGGAACCTTCATGGCTAACCACTTTGATCGCCATTACTGTGGCAAGTGTGGCTTGACCTACGTGTACCAGAAGGCCGCTGCTTAG 468 0.5427 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAILQFYKIDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKAAA* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1404 155 PRINTS Ubiquitin signature 53 74 IPR019956 -
Ahy15g1404 155 PRINTS Ubiquitin signature 11 31 IPR019956 -
Ahy15g1404 155 PRINTS Ubiquitin signature 32 52 IPR019956 -
Ahy15g1404 155 PANTHER UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1 1 146 - -
Ahy15g1404 155 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Ahy15g1404 155 Pfam Ribosomal protein S27a 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Ahy15g1404 155 Gene3D - 81 154 IPR038582 -
Ahy15g1404 155 SMART Ribosomal_S27_2 102 147 IPR002906 GO:0003735|GO:0005840|GO:0006412
Ahy15g1404 155 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Ahy15g1404 155 SMART ubq_7 1 72 IPR000626 GO:0005515
Ahy15g1404 155 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Ahy15g1404 155 CDD Ubl_ubiquitin 1 76 - -
Ahy15g1404 155 Gene3D - 1 80 - -
Ahy15g1404 155 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Ahy15g1404 155 PANTHER UBIQUITIN 1 146 - -
Ahy15g1404 155 SUPERFAMILY Zn-binding ribosomal proteins 100 152 IPR011332 GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1404 Ahy-Chr15 24601593 24602360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1404 1 152 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 96.711 1.16e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1404 K02977 - gmx:100527854 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1404 15 24601593 24602360 Ahy15g1404 15 24601593 24602360 ECH