LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g1303	ATGTCTCGCTCCCTCAACAGCAGAACTTTATTCTTGATTCTAATCTCAACTGTGCTGATGAAGCACGGTAATTCAATGCCAACATACAATTATCATGACTGTAAAGATCCATTATTGGAGAATGCAACCACCGGTGCCATTTTCCAATCTGATCTAACTTATCTTTTGAGGCTTTTATCTTCAGCAGCTTTCTCTAAGAGCTTCCACAAGGCTAATGTTTCCACAAGGCTGTATGGCCTCTTCCAATGCAGGGCTGATGTGTCCCAGGTCACCTGCAAAAACTGTACCATAACTGCCAGTATAGAAATCAAAAGCAAGTGCGCATCGAAATCTAGTGCAGTAATCTGGTACGACGAATGCATGCTTAGGTACTCCAAGGAACAGTTTTTTGGGGTGGCGCAAACTAAGCCATTAGTATTTGCTTGGAACATTGACGACAATAATAGCACTTCACCGACTGAAACTTATCTCAATGTACAAGCAGTGATGTACCAGTTGATAGAACAAGCCTCAAGTAGGGATATGCTGTTCAGTGTAGGGAAATATAAGGTAAATAATGGGTCCGAGGATAGATACGGGTTGGTGCAGTGTACAAGGGATATAAATCGCTCTTCATGTGCGTCTTGTTTGTCTAATTTGATGGATAGATCTAAGACTTGTTGCGAACACAGTGTTGGGTGGCGCTTACTGGCTCCTACTTGCATTATAAGGTACGAGAAGGATATCTTCTATGATAGTTTAGAGCCACTAGTATCACCTAATACTAGCAAACCGAGACTACCATCGAAAGATAACAGAAATCGCACTGCAAAACTCCTTATACTCCACATGGTCATTCCAATTACGGTTTTTATGCTCTTCTGTCTTGTCTGGTCAGCTCAACCCAAGGAAAGACGAAATCAAGGGGAACAGCTTACCGATGTAATTCAAGTAAATAAGTTGAAAGGTTCAAGTAGGTCGTACTTTAAGGATCAAGGAATGATTACACTCGAAGACAACAAAGGAGAAGTACAGTGCTTTAGTTTGAGCACGATTAAGGTTGCTACCAACAGTTTTTCTGATGACACTAAGCTAGGTGAAGGTGGCTTTGGGCCCGTTTTCAAGGGGAAGTTAAATAATGGAAAGGAAATAGCAGTTAAAAGGCTTTCATTCAAATCAAGACAAGGCATTGAAGAATTCAAGAATGAAGTGACGTTGATTGCAAAACTTCAACACAAAAATCTTGTTAGGCTCTTGGGATGCTGCCTTGATAGAAACGAAAAGCTTCTTGTCTACGAGTACATGGCCAACACCGGTCTCGATGCTTTTCTATTTGATCAAAACAAACGTGGAAAGCTGGACTGGCCTAAGCGGGAAAAAATTATAAATGGAATTGCAAGAGGTCTTTCATATCTACACGAGGATTCCAGGCTGAAAATTATTCATAGAGATTTGAAAGCTAGCAATGTATTGTTAGACCAAGACATGAATCCCAAGATATCAGATTTTGGGACTGCTAGAATATTTTATAGCGATCAAATTGAAGCAAGCACCGAAAGGGTTGTTGGTACATATGGTTATATGGCACCAGAATATGCTTTGGAAGGGTCATTTTCGGTCAAATCTGATGTTTACAGCTTTGGGGTACTGATGTTGGAAATTTTAAGCGGGAGAAAGAACATTGGTTTCTTCCAACCAGAGCGTCGTCGTGATCAAACTCTAACTCTTATATCTTATGCATGGCGACTCTGGAGCGAAGGCAAGGAGCTGGAATTTCTGGATCATGTCCTGGTCAACGCTTGCCCCATAGATGTGGCGTTGAGATGGATTCATATTGGACTGTTGTGTGTTCAAGAAAGGCCCAAAGATAGGCCCACCATGTCCTCGGTTATTTTGATGCTTGGAAGCACTACAGCCCTTCCTCTACCACTTGCACCTCCATTCTCTTTAAGCAACTATTATGATAATACAACTGACGAATTTTCAATAACGGAAGAAAAAGAGGAGGAGGTGGAAGAAGAGGAGGATGATAATTCCAATCCTTTTTCAGTAAAATTATAG	2040	0.4113	MSRSLNSRTLFLILISTVLMKHGNSMPTYNYHDCKDPLLENATTGAIFQSDLTYLLRLLSSAAFSKSFHKANVSTRLYGLFQCRADVSQVTCKNCTITASIEIKSKCASKSSAVIWYDECMLRYSKEQFFGVAQTKPLVFAWNIDDNNSTSPTETYLNVQAVMYQLIEQASSRDMLFSVGKYKVNNGSEDRYGLVQCTRDINRSSCASCLSNLMDRSKTCCEHSVGWRLLAPTCIIRYEKDIFYDSLEPLVSPNTSKPRLPSKDNRNRTAKLLILHMVIPITVFMLFCLVWSAQPKERRNQGEQLTDVIQVNKLKGSSRSYFKDQGMITLEDNKGEVQCFSLSTIKVATNSFSDDTKLGEGGFGPVFKGKLNNGKEIAVKRLSFKSRQGIEEFKNEVTLIAKLQHKNLVRLLGCCLDRNEKLLVYEYMANTGLDAFLFDQNKRGKLDWPKREKIINGIARGLSYLHEDSRLKIIHRDLKASNVLLDQDMNPKISDFGTARIFYSDQIEASTERVVGTYGYMAPEYALEGSFSVKSDVYSFGVLMLEILSGRKNIGFFQPERRRDQTLTLISYAWRLWSEGKELEFLDHVLVNACPIDVALRWIHIGLLCVQERPKDRPTMSSVILMLGSTTALPLPLAPPFSLSNYYDNTTDEFSITEEKEEEVEEEEDDNSNPFSVKL*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g1303	679	CDD	STKc_IRAK	358	627	-	-
	Ahy15g1303	679	SMART	serkin_6	352	591	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy15g1303	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Ahy15g1303	679	Gene3D	Transferase(Phosphotransferase) domain 1	428	633	-	-
	Ahy15g1303	679	ProSiteProfiles	Protein kinase domain profile.	352	633	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy15g1303	679	ProSiteProfiles	Gnk2-homologous domain profile.	30	129	IPR002902	-
	Ahy15g1303	679	Pfam	Protein tyrosine and serine/threonine kinase	356	625	IPR001245	GO:0004672\|GO:0006468
	Ahy15g1303	679	ProSiteProfiles	Gnk2-homologous domain profile.	135	243	IPR002902	-
	Ahy15g1303	679	MobiDBLite	consensus disorder prediction	655	670	-	-
	Ahy15g1303	679	PANTHER	PROTEIN KINASE DOMAIN	20	654	-	-
	Ahy15g1303	679	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	20	654	-	-
	Ahy15g1303	679	SUPERFAMILY	Protein kinase-like (PK-like)	336	649	IPR011009	-
	Ahy15g1303	679	Coils	Coil	647	667	-	-
	Ahy15g1303	679	Gene3D	Phosphorylase Kinase; domain 1	327	427	-	-
	Ahy15g1303	679	Pfam	Salt stress response/antifungal	150	240	IPR002902	-
	Ahy15g1303	679	Pfam	Salt stress response/antifungal	40	126	IPR002902	-
	Ahy15g1303	679	MobiDBLite	consensus disorder prediction	655	679	-	-
	Ahy15g1303	679	Gene3D	-	28	129	IPR038408	-
	Ahy15g1303	679	Gene3D	-	138	243	IPR038408	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g1303	Ahy-Chr15	21219850	21222943	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy15g1303	2	649	Receptor kinase-like Gene Family	AT4G05200	43.155	2.59e-167	494

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ahy15g1303		PK_Tyr_Ser-Thr	9.90E-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g1303	-		-	adu:107488599	954.125