LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g1302	ATGCTCTATCAGTCTAACTTACTTTTTGGTCTTTTGGCTGAAAAGGTGATCATGGACAAGGACAAGGACACACCTTTAGTTATGTATATGTTTGTCATTTGTATGTTATTGTTATGTGTTGGAAGCAGCACAGACCCTCTTGACACATATTGTCCAACTGAATTCCCATTATATAGCAGCAACAGCACATTTGACAATAACCTGAAGCTTCTTTTGGGGTTGCTGCCCTCCAACACGGCTTCCAAGAATGGCTTCTACAACACATCCGTGGGAGATGGGGAAGACAAGGTGTACGGACAAGCACTGTGCAGAGGAGACATCACCAACTCCACAGTCTGCAAGGAATGCATTCAGAAAGCAAGCCAAGATTTAACAAAGATGTGCAACAGTGAAGATGCAATCATATGGTATGAGCTTTGCCAAGTCCGCTACTCCTTTCAGATGTTCTTCACGAGTATGACTTACACCGGGAAGTATCCTAACCATAATCTTAAGGAGAAGAATATCTCGCACCCTTCTGGATTTGATCAAGTCTTGGCATATCTGATGAACAACCTCTCACAAGAAGCAGCTTTTATTCCTGCCAACAACATGTTTGCAGCAGGGGAGATTCAATATTCTGGTTCTGATGGTATCAAGAACAAGAAGCTTTATGGACTAGTCCAGTGTACCAGGGATACCTCTCAAGCAGACTGTGCCACTTGCTTGAGTTCTGCCTTAACAGAACTTACTCAATGCTGCTCCTTCCGAGAAGGCGGTATCATTCTTAGTCGGACTTGCAATGTGAGGTTTGAATCATACAGGTTCTTCAACCATTCATCAGCAAAGATGCTGCTCTTTCCGACTTCCAAAGGAGGGGAAAAATGGAAGCCATGGATGTTTGCATTGACAATTGGTGGTTCACTCTTAGTATTAGCAGTTACTATTTTGCTGTGCACTGCTTGCCTGCTCCGCAAAGGGGACACAGAGAGAGATGAAGAAAGGATCGAAAGGACGCTACTACAACAGTTGGCAAGCTCCAAGAGCGTAGCAGTTACACAGGAAGGTGACCTGATTAGCTCTGATGAACTGTCGTTCATGAACTTAGCAACCATTAAGGATGCCACTGATGACTTCTCTGATACAAATAAACTGGGACAAGGAGGATTTGGTGCAGTGTACAAGGGTGTTCTACCAGATGGCAGTGAAGTTGCAGTTAAAAGGCTATCAAAAAAGTCTTGGCAAGGGATAGAGGAATTGAAAAATGAGGTCATACTCATTGCCAAGCTTCAGCATAAGAATCTAGTGAGGCTGTTGGGGTGTGGCTTAGAGGGGGATGAAAAATTTCTCATATATGAATTCATGTCAAACAAAAGCCTTGATCAATTTATCTTTGACCCAGAGAAACGTTCCGAGTTTGATTGGCATACTTGGTATGGGATTATCAATGGCATTGCGAGAGGACTGCTTTATCTTCACGAGGAGTCTCGGCTTAAAATCATTCACAGGGATTTAAAGCCAAACAATGTGTTGTTGGACCATGAAATGGTTGCCAAAATATCAGATTTTGGTATGGCTAGGATATTTTACGAGAATCAAAATACAGCAAACACAAAGAGAGTTGTGGGAACATATGGATATATGGCTCCCGAATATGCAATGGAAGGACTCTTCTCAGTAAAATCGGATGTGTTCAGCTTTGGTGTCATGTTGCTTGAAATAATCAACGGGAAAAGAAACAGTGGGTTCTACACAACAGAACTTGCCCCAACACTACTGGCATATGCATGGCAGCTGTGGAATGAAGAGAGGAAGTTGGAATTTGTGGATCCAGTGTTGTTGGAATCGTGTGTGGCCTGTGAAGTTGTGAAGTGCATGCACATTGGGCTTCTGTGTGTGCAGGAAGATCCGGAGCTGAGGCCTAACATGTCAAGCGTGGTGGTTCTCCTAGGAAGTGAACAAATGGCTCTTCCAAAACCAAGTCAACCAGCATTTTCATTGGGTAGGGCGTTTCATGTTGATCAAGATCCAGGTCCAGCCACTACAACCAATCCTTCTATGAACGGGGGGAGTATATTGTCCAGTGTCTTACCTAGATGA	2079	0.4353	MLYQSNLLFGLLAEKVIMDKDKDTPLVMYMFVICMLLLCVGSSTDPLDTYCPTEFPLYSSNSTFDNNLKLLLGLLPSNTASKNGFYNTSVGDGEDKVYGQALCRGDITNSTVCKECIQKASQDLTKMCNSEDAIIWYELCQVRYSFQMFFTSMTYTGKYPNHNLKEKNISHPSGFDQVLAYLMNNLSQEAAFIPANNMFAAGEIQYSGSDGIKNKKLYGLVQCTRDTSQADCATCLSSALTELTQCCSFREGGIILSRTCNVRFESYRFFNHSSAKMLLFPTSKGGEKWKPWMFALTIGGSLLVLAVTILLCTACLLRKGDTERDEERIERTLLQQLASSKSVAVTQEGDLISSDELSFMNLATIKDATDDFSDTNKLGQGGFGAVYKGVLPDGSEVAVKRLSKKSWQGIEELKNEVILIAKLQHKNLVRLLGCGLEGDEKFLIYEFMSNKSLDQFIFDPEKRSEFDWHTWYGIINGIARGLLYLHEESRLKIIHRDLKPNNVLLDHEMVAKISDFGMARIFYENQNTANTKRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVMLLEIINGKRNSGFYTTELAPTLLAYAWQLWNEERKLEFVDPVLLESCVACEVVKCMHIGLLCVQEDPELRPNMSSVVVLLGSEQMALPKPSQPAFSLGRAFHVDQDPGPATTTNPSMNGGSILSSVLPR*	693

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g1302	692	Pfam	Protein tyrosine and serine/threonine kinase	375	641	IPR001245	GO:0004672\|GO:0006468
	Ahy15g1302	692	SUPERFAMILY	Protein kinase-like (PK-like)	354	642	IPR011009	-
	Ahy15g1302	692	Gene3D	-	157	269	IPR038408	-
	Ahy15g1302	692	Gene3D	-	46	149	IPR038408	-
	Ahy15g1302	692	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	493	505	IPR008271	GO:0004672\|GO:0006468
	Ahy15g1302	692	PANTHER	CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN	29	672	-	-
	Ahy15g1302	692	SMART	serkin_6	372	643	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy15g1302	692	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	29	672	-	-
	Ahy15g1302	692	ProSiteProfiles	Gnk2-homologous domain profile.	157	269	IPR002902	-
	Ahy15g1302	692	Gene3D	Transferase(Phosphotransferase) domain 1	448	652	-	-
	Ahy15g1302	692	Pfam	Salt stress response/antifungal	167	267	IPR002902	-
	Ahy15g1302	692	Pfam	Salt stress response/antifungal	57	146	IPR002902	-
	Ahy15g1302	692	ProSiteProfiles	Protein kinase domain profile.	372	658	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy15g1302	692	MobiDBLite	consensus disorder prediction	668	692	-	-
	Ahy15g1302	692	CDD	STKc_IRAK	378	640	-	-
	Ahy15g1302	692	ProSitePatterns	Protein kinases ATP-binding region signature.	378	400	IPR017441	GO:0005524
	Ahy15g1302	692	Gene3D	Phosphorylase Kinase; domain 1	333	447	-	-
	Ahy15g1302	692	MobiDBLite	consensus disorder prediction	670	692	-	-
	Ahy15g1302	692	ProSiteProfiles	Gnk2-homologous domain profile.	45	149	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g1302	Ahy-Chr15	21216680	21219544	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy15g1302	51	660	Receptor kinase-like Gene Family	AT4G23230	41.494	9.02e-162	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Ahy15g1302		PK_Tyr_Ser-Thr	1.10E-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g1302	-		-	adu:107488598	1355.5