Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1288 ATGGCGAATGGTATCACGCACGAGCCTTCTCCTTCCATGCTAGTCCGCCGGTTTAACGCCTTACTTCCCCAGTGCCAAGGCTACCTCAAGGCCGAAGAAATTGTTTGGACGTATGGGCTATTGTTGTCAGAGCTCACCTCCAATGTGAACTCCATCATTAGCGATTTCACTATCATTGCCGGCCAACAGAGGAAACACGCCAAGGGCATCGCGGATGCCATTTGCAATCGGATTCTTGAGGTGCCTGCTGATAAAAAAATTCCTTCTCTCTATCTTCTGGACAGTATTGTGAAGAATTTTGGCCAGGAATATGTTAAACACTTCTCTTTACGTCTACCTCAAGTTTACTGTGAGGCATACAGGCAGGTCCAGCCCAATCTGCATTCTGTTCTGCAACGTCTCTTTGGTACCTGGTCAAAGATCTTTCCTCCCTCTGTCCTAAGTAATATTGAAGCTCAATTGCAATCTTCACCAGCAGTTAATAATCAACAATCCTTTGCTAATCACCTTGGGGCATATGATTTTCGTGGACCGATTCTTGGGGCTCATGTTATTAAACCACAATCTTTGCAGCAGATGGAACACTCTAGTTCAATTATGGATAATGTTGGTGGTGATAAGTTGGATTCAACGGAAACTGTAGGTAATACAAGAGAAGGAGGGTTGAATGAATGGCAGCAAAAGAGATTTTCTAGTGATGGTTGGAACATATTTCAAACTTCCAAGACTTATAATCTCAATGATGAACAACAACGTCAAAGTCCAAGAGCTCTTATTGAGGCATATGGTTGTGACAAAGGCCGTGAAATTCTTAGTACTAAGCTTTTGTTGGTGGAGCAGCCTGGCAGAAATGGTTTAGGGAGCAAGTTTCCATTGGCATCATGGCAGGACACTGAAGAAGAGGAGTTTGATTGGAAAGATATGAATCCAGGATTAGTAGACTGTAATACAAACAGTAGTTCTATGCAATCAAGTGTTAGATTCTCCAGGAAAAGGAAGTTATCTAATGATCTATCTAATTCTTCACAGTACCCCTTTAATATGGGGGCTGCTCTCTTTGCTGTCAATGCTCATGCTACTTGCCCTTCCGACTTGAATCCAGCATTTTCATTGCAAAAACGTCCTAGGAGTCTGTTTGAACCAATAAACGTTAATAATAACACCAATGTGGGTCATGGTCCAAATAGAACTTTGTTTATACATGACCAGTTGCCTAATCAACCTGGACCAATTTCCTCTAACCTGCAAAATCATGGACAAGCACCTCAACTACAGTTTCTTCCACCTCAAGTTCCATCTTCAACACAAATTAGTCATGGTGCCTTAATAAGTACGCCCATCTCAAATCCATTACCTGATATGCAGGGCCAAAGTTTACATTTACATGGGGGAACCTTGCCACTTTTACATCCAAGCCTCCCAACTGCTCCATCACAAATGATGTCTCATCCCCATGCCGATGCTTCGGTGACAAGTCAACCACCACCTGCATATCTTAATTTGATTAGTTCACTAGTGAACCATGGTGTGATCTCGGTAATTAATCCCCCCACCAATCCACCCACCGGACTGGATTCCATTGGGACAGAGTTCGATCCAGATATCTTGAAGGTTCGTCATGAAGGTGTAATCAGTGCCTTATACGGTGATCTTCCTAGACAATGCACGAGCTGCGGTCTCCGATTCAAAAGGCAAGATGAGCACAGTAGACATATGGATTGGCACGTGACTAGGAACCGAATGTCGAAAAGCCGGAAGCAGAAGGGGTCTCAAAAGTGGTTTGCAAGTGGGAGCATGTGGCTAAGTGGTGCAGAGGCTTCGGGAAAAGAATCGATTCCAGGGTCGTTGGCTCCCGAGGATACAGAGGAAATGAAAGATGAGGAAGAGTTAGGCGTTCCTGCTGAAGAGGATCAAAGTCGATGTGCACTGTGTGGAGAGGGCTTCGATGAGTTCTACAGCGACGAAATGGATGAGTGGATGTATAGAGGAGCCACATACCTTAAGGCACCCATGGGAATAACATTGGCCACCATGGACAGACATCAACTAGGGCCCATTGTTCATTCCAAATGCAGATCTGACTCTGACTCGGGAACCTACCAAGAAAGTAGTAAGAAAAAAAGAATGCGGGTCGACCAAACATCAATTTTGTGCACCCTTAATTAG 2166 0.4423 MANGITHEPSPSMLVRRFNALLPQCQGYLKAEEIVWTYGLLLSELTSNVNSIISDFTIIAGQQRKHAKGIADAICNRILEVPADKKIPSLYLLDSIVKNFGQEYVKHFSLRLPQVYCEAYRQVQPNLHSVLQRLFGTWSKIFPPSVLSNIEAQLQSSPAVNNQQSFANHLGAYDFRGPILGAHVIKPQSLQQMEHSSSIMDNVGGDKLDSTETVGNTREGGLNEWQQKRFSSDGWNIFQTSKTYNLNDEQQRQSPRALIEAYGCDKGREILSTKLLLVEQPGRNGLGSKFPLASWQDTEEEEFDWKDMNPGLVDCNTNSSSMQSSVRFSRKRKLSNDLSNSSQYPFNMGAALFAVNAHATCPSDLNPAFSLQKRPRSLFEPINVNNNTNVGHGPNRTLFIHDQLPNQPGPISSNLQNHGQAPQLQFLPPQVPSSTQISHGALISTPISNPLPDMQGQSLHLHGGTLPLLHPSLPTAPSQMMSHPHADASVTSQPPPAYLNLISSLVNHGVISVINPPTNPPTGLDSIGTEFDPDILKVRHEGVISALYGDLPRQCTSCGLRFKRQDEHSRHMDWHVTRNRMSKSRKQKGSQKWFASGSMWLSGAEASGKESIPGSLAPEDTEEMKDEEELGVPAEEDQSRCALCGEGFDEFYSDEMDEWMYRGATYLKAPMGITLATMDRHQLGPIVHSKCRSDSDSGTYQESSKKKRMRVDQTSILCTLN* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1288 721 MobiDBLite consensus disorder prediction 605 636 - -
Ahy15g1288 721 Gene3D - 26 157 IPR008942 -
Ahy15g1288 721 SMART 558neu5 33 155 IPR006569 -
Ahy15g1288 721 CDD CID_Pcf11 42 156 - -
Ahy15g1288 721 ProSitePatterns Zinc finger C2H2 type domain signature. 555 575 IPR013087 -
Ahy15g1288 721 ProSiteProfiles CID domain profile. 30 158 IPR006569 -
Ahy15g1288 721 Pfam CID domain 50 148 IPR006569 -
Ahy15g1288 721 SUPERFAMILY ENTH/VHS domain 33 156 IPR008942 -
Ahy15g1288 721 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 696 - -
Ahy15g1288 721 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 696 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1288 Ahy-Chr15 20850044 20853574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1288 462 710 C2H2 Transcription Factor Family AT4G04885 55.294 7.29e-84 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy15g1288 CID 1.10E-11 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1288 K14400 - aip:107640327 666.766