Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1243 ATGGCGTCAAGATTTTGGACCCAGGGTGCGAGCGATTCTGAGGAAGAAAGCAGTGACTTTGATGAGGTTGAAGAGACGACGGCTGGTGAAGTCGGTCCCGCTGCCAATACGAGGTATTTGACAACTGAGGTGAGTGACAGTGATGACTCGGATAGCCAGAGGCGGGTTGTCCGGTCGGCAAAGGATAAGCGATTCGAGGAGATGGCTTCTACCGTTGATCAGATGAAGAATGCCATGAAGATCAATGATTGGGTGAGCTTGCAGGAGAGCTTTGATAAGATCAACAAGCAGCTTGAGAAGGTCATGCGTGTTACCGAGTCTGAGAAGGTCCCCAGTCTCTACATCAAGGCCCTGGTGATGTTGGAAGACTTTTTGGCTCAGGCTTTAGCCAATAAGGATGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCTTTGAACTCGATGAAGCAGAAGTTGAAGAAGAACAATAAGCAATATGAGGAACTGATTAACAAATGCAGGGAGAGCCCTGAGAGTGAGGAGGAGAAAGAAGAGGAGGAATCTGAGGAAGAGTATGAGAGTGATGGTGAGATTATCGAGCCGGATCAGCTTAAGGGAAGAGATGACCTGAAATCAGATTCTGAAGTCTCTCACTATGAAGATGAAAAGGTCGATGCTGGTGAGGGACCCTGGGACCAAAAACTTAGCAAGAGAGACAGACTTATGGATAGGCAATTCATGAAAGACCCTAGTGAGATCACTTGGGACACCGTCAACAAGAAATTCAAGGAGGTTGTGGCAGCAAGGGGCAGGAAGGGAACTGGAAGGTTTGAGCAGGTTGAGCAGCTTACTTTCCTTACAAAAGTTGCTAAAACACCTGCACAGAAGTTGGAGATCCTTTTTAGTGTGGTATCTGCCCAGTTTGATGTTAACCCTGGCCTAAGTGGGCACATGCCCATTAATGTTTGGAAAAAATGTGTGCATAACTTGCTGGTCATTCTTGACATTTTAGTGCAATACCCTAACATAGTTGTTGATGATGCCGTGGAGCCAGATGAGAATGAAACACAGAAGGGCCCTGACCATAATGGACCAATTCGCATTTGGGGAAACTTGGTCGCTTTCTTGGAAAGAATAGATGCCGAGTTTTTCAAGAGTTTGCAGTGCATAGATCCACATACTCGTGAGTATGTTGAGAGACTCAGGGATGAGCCAATATTTCTTGTTCTTGCTCAGAATGTCCAGGAATACCTTGAAAGGGTTGGAGATTTCAAAGCTGCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCGTTTACTACAAACCACAGGAGGTTTATGTTGCAATGAAAAAATTGGCCGAGCTGGCTGAAGATGGGGATAATGAAGGGGCTGGTGAGGAGAAAGGGTTTGAGGATACAAGAATTCCCACCCCATTTATTGCTACTCCTGAGCTTGTGCCCCGCAAACCTACCTTCCCTGAGAACAGCAGGACTCTAATGGACATATTGGTTACCCTGATATACAAGTATGGTGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGACATATACCACCATGCTCTTCTTGACGAGTTCTCAATATCCCGTGATCTGCTGCTCATGAGCCACTTGCAAGACAGCGTTCAGCATATGGACATATCAACACAGATACTGTTTAACAGGGCTATGGCACAGTTGGGTCTATGTGCTTTTCGGCTTGGGTTGATTTCCGAAGCACATGGCTGTTTATCTGAACTTTATTCTGGTGGAAGGGTGAAGGAGTTGCTTGCACAAGGTGTGTCACAGAGTCGTTATCATGAAAAGACCCCAGAACAGGAAAGGTTGGAAAGAAGGCGTCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAGGCAGTGCATCTTACAACCGCTATGCTTCTTGAAGTTCCCAATATGGCAGCCAATGTTCATGATGCAAAGCGCAAAGTCATTAGTAAGAACTTCCGCCGCTTACTTGAGGTGAGTGACAAGCAAACGTTTACTGGTCCACCTGAAAATGTCAGAGACCATGTTATGGCTGCCACAAGGGCTCTTACCAAAGGAGACTTCAACAAGGCTTATGACATCATTGTGTCTCTTGACGTTTGGAAGTTTGTTAGAAACAGAGATACTGTACTTGCAATGCTGAAAGATAAGATCAAGGAGGAGGCATTGAGGACATATCTCTTTACGTTCTCATCATCTTATGATTCTTTGAGCCTTGATCAACTCACAAAAATTTTTGATCTCTCTGTTGCTCATACTCATAGCATTGTTAGTAGGATGATGATCAATGAAGAGCTTCATGCAAGCTGGGACCAGCCAACTGGCTGCATTATTTTCCAGGATGTGGAGCACTCTAGGTTGCAGGCATTGGCATTCCAGTTAACAGAGAAGTTATCCATCCTTGCCGAGAGTAATGAAAGAGCAATGGAGGCAACGATAGGTGGTGGTGGATTGGATCTTCCTATGAGGCGTAGGGATGGCCAGGATTATGCTGCTGCTGCTGCTGGTGGAAACAACACTGGGAGTGGCAGGTGGCAGGACTTGGGTTCTCAGACAAGACAAGGTGGTGGGCGATATGGTAGTGGAGGTGGAAGGCCATTGGCTTTAGGCCAAGCAGGTGGGGTTGGATATTCAAGGGACCGAGCAGGACGTGGATCTGGTCGGTATCAAGATTCTGCATATGGAGGTTCAGGCAGGACTCAAGGTGGTTCCTCATTGAGGGGACCGCATGGTGATGTATCATCGCGCATGGTTAGCCTCAAGGGTGTGCGTGCTTAA 2796 0.4657 MASRFWTQGASDSEEESSDFDEVEETTAGEVGPAANTRYLTTEVSDSDDSDSQRRVVRSAKDKRFEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESEKVPSLYIKALVMLEDFLAQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRESPESEEEKEEEESEEEYESDGEIIEPDQLKGRDDLKSDSEVSHYEDEKVDAGEGPWDQKLSKRDRLMDRQFMKDPSEITWDTVNKKFKEVVAARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPINVWKKCVHNLLVILDILVQYPNIVVDDAVEPDENETQKGPDHNGPIRIWGNLVAFLERIDAEFFKSLQCIDPHTREYVERLRDEPIFLVLAQNVQEYLERVGDFKAASKVALRRVELVYYKPQEVYVAMKKLAELAEDGDNEGAGEEKGFEDTRIPTPFIATPELVPRKPTFPENSRTLMDILVTLIYKYGDERTKARAMLCDIYHHALLDEFSISRDLLLMSHLQDSVQHMDISTQILFNRAMAQLGLCAFRLGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLTTAMLLEVPNMAANVHDAKRKVISKNFRRLLEVSDKQTFTGPPENVRDHVMAATRALTKGDFNKAYDIIVSLDVWKFVRNRDTVLAMLKDKIKEEALRTYLFTFSSSYDSLSLDQLTKIFDLSVAHTHSIVSRMMINEELHASWDQPTGCIIFQDVEHSRLQALAFQLTEKLSILAESNERAMEATIGGGGLDLPMRRRDGQDYAAAAAGGNNTGSGRWQDLGSQTRQGGGRYGSGGGRPLALGQAGGVGYSRDRAGRGSGRYQDSAYGGSGRTQGGSSLRGPHGDVSSRMVSLKGVRA* 932
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1243 931 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 45 650 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ahy15g1243 931 SMART PINT_4 719 807 IPR000717 -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 174 191 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 1 62 - -
Ahy15g1243 931 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 930 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ahy15g1243 931 ProSiteProfiles PCI domain profile. 618 790 IPR000717 -
Ahy15g1243 931 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 719 807 - -
Ahy15g1243 931 SUPERFAMILY "Winged helix" DNA-binding domain 714 789 IPR036390 -
Ahy15g1243 931 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 1 930 - -
Ahy15g1243 931 Coils Coil 143 170 - -
Ahy15g1243 931 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 862 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Ahy15g1243 931 MobiDBLite consensus disorder prediction 845 863 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 134 153 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 154 173 - -
Ahy15g1243 931 Gene3D - 726 794 IPR036388 -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 44 62 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 133 230 - -
Ahy15g1243 931 Pfam PCI domain 658 786 IPR000717 -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 192 230 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 838 931 - -
Ahy15g1243 931 MobiDBLite consensus disorder prediction 899 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1243 Ahy-Chr15 19733483 19737349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1243 1 931 Eukaryotic Initiation Factors Gene Family AT3G56150 67.793 0.0 1188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1243 K03252 - gmx:100781967 1476.84