Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1198 ATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCAGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAAGCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCTTTCTCATCATTATCACTGCCAGATACTCTTCTTTATGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCCTCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATATTATTAACAGTAATTCCACCTTTGAAATTTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGACCAACAATCTAACCAGCCATGGTCGACAGTCCAATGA 1038 0.394 MMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALSLQNMLQPMPPAPSNLLNNLGSSFSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNIINSNSTFEIWGDFMDVDPNDAYWKDFIDQQSNQPWSTVQ* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1198 345 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 336 - -
Ahy15g1198 345 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ahy15g1198 345 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ahy15g1198 345 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Ahy15g1198 345 MobiDBLite consensus disorder prediction 244 308 - -
Ahy15g1198 345 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ahy15g1198 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ahy15g1198 345 Gene3D - 14 67 - -
Ahy15g1198 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ahy15g1198 345 PANTHER MYB TRANSCRIPTION FACTOR 4 336 - -
Ahy15g1198 345 Gene3D - 70 117 - -
Ahy15g1198 345 CDD SANT 70 113 IPR001005 -
Ahy15g1198 345 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ahy15g1198 345 SMART sant 14 64 IPR001005 -
Ahy15g1198 345 SMART sant 67 115 IPR001005 -
Ahy15g1198 345 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1198 Ahy-Chr15 18956631 18959458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1198 2 334 MYB Transcription Factor Family AT5G16770 46.667 2.33e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ahy15g1198 Myb_DNA-binding 9.30E-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1198 K09422 - gmx:547488 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g1198 15 18956631 18959458 Ahy15g1198 15 18956631 18959458 ECH