Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1060 ATGGCGAAGGAACTTGAGAACAAAGCCAAAGAGGCATTCTTGGATGACGATTTTGCCCTCGCCGCCGATTACTACTCGGAAGCCATCAACTTAGATCCCAACAACCCTCTTCTTTATGCCGACAGAGCCCAAGCCCATATCAAGCTCCAGAACTTCACAGAAGCCGTTTCTGATGCGAACAAAGCCATTCAATTGAGTCCTTCACTGGCTAAGGCATACCTTCGTAAGGGAACTGCGTGCATTAAGCTGGAAGAGTATCAAACTGCAAAGGTAGCACTTCAAACCGGTGCCTCTTTTGCTCCCGACGATTCCAGATTCACCAAGCTCATTCAAGATTGTGATCGCTACATTGCAGAAGAATCGAATGATCTTGCTAGCACCTTATTGCCCCGCGTCCCCACAACTCCTGCCGGTAATGGTTCGCATTCGACTGATAGAAGTATAGATTCTACTAAAGAAGCTGAAAGAGACAGTTCGGTACCCCAAATCAATGAAGTTGCAACAACCAGGCCAAAATTCAGGGAAAAAGTGACTGCAACTTTTGATCTGCTATTAATTCTACATGAATACTACCAGAGGCCAGAAGAAGTGGTTGTGACGATATTTGCTAAAGGCATACCAGCAGACGACGTAATTGTTGACTTTGGTGAACAGATTATGAGTGTTACTATTGCTGTTCCCGGACAAGAACCCTATCGTTATCAACAACGATTGTTCGGAAAGATAGTACCCGATAAGTGCAGAGTCCTGGTGTTGTCAACTAAAGTTGAAATCCGCCTTGCAAAAGCTGAAGCTCTTAATTGGACATCTCTGGAATATAGCAAGCATGTGCTTCCTCAGAAAATAAATGCGTTGACAAATCAACCTGAAAGGCCAACATACCCATCATCAAAGCCAAGGACAAAAGATTGGGATAAGTTGGAAGCACTGATGAAAAAAGAGGAGAAAGAAGAGAAGCTAGACGGTGATGCTGCTTTGAACAAATTGTTCCGAGATATTTACCAAAATGCAGATGAGGACATGAGAAGAGCTATGAGCAAGTCATTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGACTGGAAAGAAGTAGGATCAAAGAAGGTGGAGAGCAGTCCCCCTGAAGGCCTGGAGTTGAAGAAATGGGAATATTGA 1155 0.4407 MAKELENKAKEAFLDDDFALAADYYSEAINLDPNNPLLYADRAQAHIKLQNFTEAVSDANKAIQLSPSLAKAYLRKGTACIKLEEYQTAKVALQTGASFAPDDSRFTKLIQDCDRYIAEESNDLASTLLPRVPTTPAGNGSHSTDRSIDSTKEAERDSSVPQINEVATTRPKFREKVTATFDLLLILHEYYQRPEEVVVTIFAKGIPADDVIVDFGEQIMSVTIAVPGQEPYRYQQRLFGKIVPDKCRVLVLSTKVEIRLAKAEALNWTSLEYSKHVLPQKINALTNQPERPTYPSSKPRTKDWDKLEALMKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVESSPPEGLELKKWEY* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1060 384 MobiDBLite consensus disorder prediction 127 145 - -
Ahy15g1060 384 MobiDBLite consensus disorder prediction 127 165 - -
Ahy15g1060 384 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Ahy15g1060 384 ProSiteProfiles CS domain profile. 183 272 IPR007052 -
Ahy15g1060 384 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Ahy15g1060 384 Pfam CS domain 188 262 IPR007052 -
Ahy15g1060 384 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Ahy15g1060 384 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
Ahy15g1060 384 SMART tpr_5 2 35 IPR019734 GO:0005515
Ahy15g1060 384 SMART tpr_5 70 103 IPR019734 GO:0005515
Ahy15g1060 384 SMART tpr_5 36 69 IPR019734 GO:0005515
Ahy15g1060 384 Gene3D - 186 275 IPR008978 -
Ahy15g1060 384 CDD p23_CS_SGT1_like 189 272 - -
Ahy15g1060 384 MobiDBLite consensus disorder prediction 363 384 - -
Ahy15g1060 384 PANTHER PROTEIN SGT1 HOMOLOG A 1 384 - -
Ahy15g1060 384 SUPERFAMILY HSP20-like chaperones 186 278 IPR008978 -
Ahy15g1060 384 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Ahy15g1060 384 PANTHER PROTEIN SGT1 HOMOLOG 1 384 IPR044563 GO:0051087
Ahy15g1060 384 MobiDBLite consensus disorder prediction 362 384 - -
Ahy15g1060 384 ProSiteProfiles SGS domain profile. 293 384 IPR007699 -
Ahy15g1060 384 Pfam SGS domain 302 382 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1060 Ahy-Chr15 16242794 16246218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1060 1 94 U-box Gene Family AT3G07370 35.106 7.36e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1060 K12795 - gmx:100784022 504.982