Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g1001 ATGCGGTCTTATTGGTGGAGGAATGCTTGTTACCTACTCCTCCTTTTAAGTTCCCAATTCCATTCCCTTCGTCACATAAATAATAAAAACACTTTCTTCTTTGTTCTCTCTTCAGTTTTCACCAATTCTCTCATTCACTCTGCGTTGTGGTTGTGGAAAATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCTTCTTCTTCTTCTTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGGTTATGGGTTAAGAGAGAACCCAAAGAGAAGTTTCAGGGTTGCAGATCCTGAATTCTCTTTCCCTGCTGCTGATGATGCTACTGTAGTGGTCCAAGACAGAGAGAGCGAGACTGAGTCAAAGAACAAACCAACTCGGACACGAAGACGATCCAACCGTACACGAAAATCCTCCATTATGAACCTTACAAACAAGAGGACCAAGCTCATGAGTTTCATGGAGTCACCAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAGACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTGTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGTCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTCCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 1089 0.4527 MRSYWWRNACYLLLLLSSQFHSLRHINNKNTFFFVLSSVFTNSLIHSALWLWKMERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKGYGLRENPKRSFRVADPEFSFPAADDATVVVQDRESETESKNKPTRTRRRSNRTRKSSIMNLTNKRTKLMSFMESPASIATEAAEPVSSVSDTSPEEDLAMCLIMLSRDKWRKTSVEEEEEMKLKNKKVLRGKHHHHHHRLQCDKCGKTFRSSGALGSHRSICLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPPSIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g1001 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 84 IPR013087 -
Ahy15g1001 362 SUPERFAMILY beta-beta-alpha zinc fingers 261 317 IPR036236 -
Ahy15g1001 362 MobiDBLite consensus disorder prediction 118 133 - -
Ahy15g1001 362 MobiDBLite consensus disorder prediction 150 165 - -
Ahy15g1001 362 Pfam Zinc finger, C2H2 type 262 281 IPR013087 -
Ahy15g1001 362 MobiDBLite consensus disorder prediction 81 177 - -
Ahy15g1001 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 261 282 IPR013087 -
Ahy15g1001 362 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Ahy15g1001 362 Pfam C2H2-type zinc finger 56 81 - -
Ahy15g1001 362 Pfam C2H2-type zinc finger 295 317 - -
Ahy15g1001 362 SMART c2h2final6 261 281 IPR013087 -
Ahy15g1001 362 SMART c2h2final6 57 79 IPR013087 -
Ahy15g1001 362 SMART c2h2final6 295 317 IPR013087 -
Ahy15g1001 362 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 54 362 - -
Ahy15g1001 362 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 54 362 IPR044303 GO:0006355
Ahy15g1001 362 ProSitePatterns Zinc finger C2H2 type domain signature. 297 317 IPR013087 -
Ahy15g1001 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 317 IPR013087 -
Ahy15g1001 362 Gene3D Classic Zinc Finger 259 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g1001 Ahy-Chr15 15342482 15344128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g1001 54 359 C2H2 Transcription Factor Family AT3G60580 34.451 4.05e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ahy15g1001 zf-C2H2_6 2.20E-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g1001 - - aip:107643045 657.521