Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0974 ATGCCATGTTCGAGGTCTATTCCCATCCAAGCATCTCGTGAGGAGTTCGATCTGAGGATCTCCCATGCTATTTCTGTTCAAGCTTTTCATGATCAAGAAGAAGCAAGACTCGAAGCAGAATTAACTCAAATTCAGGAACAACTTGCCACCATATGCCAAAATCGAGCCACCATAGCCAAACATCTGGCTGCAGCCCAACAAGAACAACATCTCCTTATTCAGGAACTTGTCTCAATCTACACAAAGCGGGGAGAATATGAAAAACAACTTGAGAAAATTCAAACTGACAAGTTCAAACAGATTGAAGTGCTTTCAATTCTGGAAAACAAAAGGGGAAAGCTGCGCTCCGATTTGACGTGTGGCACATGGCATTCGGCATTGGCAACTGCCAATGGAAAACTTTTTACGTTCGGTGATGGAACATTTGGTGTCTTAGGTCATGGAGATAGAGAGAGTGTGTTATATCCAAAGGAAGTGCAGTTATTAAGTAGATTTAGGACTCTTAAAGTTGCATGTGGAGTATGGCACACTGCAGCTATTATAGAGGTAACACTTCAGTCTAGTTCAAATGTTTCATCAAGGAAGCTCTTCACTTGGGGTGATGGTGATCAGTATCGTTTGGGGCATGGAAACAAGGAAACATACCTTCAACCGACTTGTGTCTCATATCTTATAGAAGCATGTGGAAACACTATGACTGTTGCCCCCACTACATCTGGTCATATTTTCACTATGGGAGGCACTGAACATGGTCAACTAAGAAATTCTTTGTCCGATGGAAAAGTACCAATGCTAGTACAAGATAAGTTGGTAGGTGAGTATGTTGAGGAAATATCATGTGGATCTCATCATGTGGCTGTATTGACATTAAGAAGTGAACTATATACATGGGGGAAAGATGCCAATGGAAGATTGGGACATGGAGACACAGAAGATAGGAAGGGTCCAATAATAGTGGAAGTCTTGAAAGAAAGGCATGTAAAAAACATTTCGTGTGGGTCGAAGTTTACAGCTTGCATATGCATCCATAAATGGGTCTCGGGAGTTGAGCAATCTAGTTGTACCGCATGTAGGCAACCATTTAGATTTACTAGAAAAAGGCACAATTGTTATAATTGTGGGTTAGTGCATTGCCATGGTTGCAGTTCAAAAAAGGCATTGAGGGCAGCATTGGCTCCAACACCCGGAAAACCTCATCGTGTGTGTGATTCTTGTTATACTAAGATTAAAAATGTTGAGTCGAATTCTGGTGCCATTTTTAATAGGAGAGCTACTACTCCACCTCGTACTTCTATAGATGGAAGGGAAAGATTTACCCTGGGAGAAATAAGATCTTCAAGAACTCTCTTCCCTCTCTCAAGGATTCACAAGACTACTACAGAGCAAGTTGTTCAGGTTCCATCACTAGTGCAATTGAAAGATGTTGCATTCCCAAGTTCAACAGGTTCAATAATGCAAAATCTTTTGAAGCCTACCATCGCTGCCATACCTCCAACTCCAAGTCCACCACCAACTCCATCACTCATTTCAAGGCCCGCATCCCCGTATGCAAGAAGGCCAAGCCCTACGCGTTCCGGCGCTGGTGGATTCTCTAGAAGTCTTCTTGATAGTTTGAGGAAAACAAATGAGCTTAAGAATCAAGAAGTATCAAAATTACAGAAACAAATTCAAAGTTTGAAACAGAAAAGTAACATGAAAGATGTGGAAAATCAAAAGCTTCGCCAACATATTAAAGAAGCTACAACATTGGCAGCAGATGAGTCTTCTAAGCATAAAGCAATGCTAGAAATTTTTGAGTGCACTATCATTCAGTTGAAGCAAATGGCTGAGAAGTTGCCACCAGAGATTTCAGAAACTGAAAATTTGAGAATTGCACTTACTCAAGCTGAAGATTTTCTGAAAGAAAACTCGACATCTGAAACATTTTCTGTGCCATCAATATCAGAGTCTACTCGACAAAATGCACCTGATCCTGCCACAGATATTGGGGATTCAAAAATGCAAGAAAATGGATCATCTGTATCCGATAATAGAACAGCAGTGCAACCACAAAGCTCCGAGGAAACATCAAGGTTGGCAAGAGATGGAGAAACACAAGTTATTGAACAATTTGAGCCTGGTATTTACGTGACACTAATAGTAAGGCCTAATGGTGTCAAAATTTTCAGGAGAGTTAGATTTAGCAAGCGAAGGTTTCATGAGCAACAAGCAGAAGAATGGTGGAACATAAATAAAGAGAGGGTGCTTCAGAGATATGGTCAACAAGCTAGAAGTGATGCTAATGCATCATTTAGCACCCCGACACCACCTGCTGAAGAAAATATTGAGGTAGCACCTACCTAA 2343 0.4102 MPCSRSIPIQASREEFDLRISHAISVQAFHDQEEARLEAELTQIQEQLATICQNRATIAKHLAAAQQEQHLLIQELVSIYTKRGEYEKQLEKIQTDKFKQIEVLSILENKRGKLRSDLTCGTWHSALATANGKLFTFGDGTFGVLGHGDRESVLYPKEVQLLSRFRTLKVACGVWHTAAIIEVTLQSSSNVSSRKLFTWGDGDQYRLGHGNKETYLQPTCVSYLIEACGNTMTVAPTTSGHIFTMGGTEHGQLRNSLSDGKVPMLVQDKLVGEYVEEISCGSHHVAVLTLRSELYTWGKDANGRLGHGDTEDRKGPIIVEVLKERHVKNISCGSKFTACICIHKWVSGVEQSSCTACRQPFRFTRKRHNCYNCGLVHCHGCSSKKALRAALAPTPGKPHRVCDSCYTKIKNVESNSGAIFNRRATTPPRTSIDGRERFTLGEIRSSRTLFPLSRIHKTTTEQVVQVPSLVQLKDVAFPSSTGSIMQNLLKPTIAAIPPTPSPPPTPSLISRPASPYARRPSPTRSGAGGFSRSLLDSLRKTNELKNQEVSKLQKQIQSLKQKSNMKDVENQKLRQHIKEATTLAADESSKHKAMLEIFECTIIQLKQMAEKLPPEISETENLRIALTQAEDFLKENSTSETFSVPSISESTRQNAPDPATDIGDSKMQENGSSVSDNRTAVQPQSSEETSRLARDGETQVIEQFEPGIYVTLIVRPNGVKIFRRVRFSKRRFHEQQAEEWWNINKERVLQRYGQQARSDANASFSTPTPPAEENIEVAPT* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0974 780 SUPERFAMILY FYVE/PHD zinc finger 344 416 IPR011011 -
Ahy15g0974 780 Pfam FYVE zinc finger 344 410 IPR000306 GO:0046872
Ahy15g0974 780 SUPERFAMILY RCC1/BLIP-II 116 345 IPR009091 -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 755 780 - -
Ahy15g0974 780 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 240 291 IPR000408 -
Ahy15g0974 780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 348 419 IPR013083 -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 495 510 - -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 665 689 - -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 636 698 - -
Ahy15g0974 780 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 132 183 IPR000408 -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 755 770 - -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 636 658 - -
Ahy15g0974 780 Coils Coil 535 562 - -
Ahy15g0974 780 Pfam Regulator of chromosome condensation (RCC1) repeat 293 340 IPR000408 -
Ahy15g0974 780 Pfam Regulator of chromosome condensation (RCC1) repeat 131 180 IPR000408 -
Ahy15g0974 780 Pfam Regulator of chromosome condensation (RCC1) repeat 196 231 IPR000408 -
Ahy15g0974 780 Gene3D - 30 225 IPR009091 -
Ahy15g0974 780 Pfam Transcription factor regulating root and shoot growth via Pin3 698 752 IPR013591 -
Ahy15g0974 780 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 348 410 IPR017455 -
Ahy15g0974 780 SMART fyve_4 342 411 IPR000306 GO:0046872
Ahy15g0974 780 Coils Coil 27 54 - -
Ahy15g0974 780 MobiDBLite consensus disorder prediction 495 532 - -
Ahy15g0974 780 ProSiteProfiles BRX domain profile. 698 753 IPR013591 -
Ahy15g0974 780 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 292 343 IPR000408 -
Ahy15g0974 780 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 682 760 - -
Ahy15g0974 780 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 117 679 - -
Ahy15g0974 780 PRINTS Chromosome condensation regulator RCC1 signature 294 308 IPR000408 -
Ahy15g0974 780 PRINTS Chromosome condensation regulator RCC1 signature 133 149 IPR000408 -
Ahy15g0974 780 PRINTS Chromosome condensation regulator RCC1 signature 278 294 IPR000408 -
Ahy15g0974 780 PRINTS Chromosome condensation regulator RCC1 signature 167 180 IPR000408 -
Ahy15g0974 780 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 170 180 IPR000408 -
Ahy15g0974 780 Gene3D - 226 347 IPR009091 -
Ahy15g0974 780 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 682 760 - -
Ahy15g0974 780 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 117 679 - -
Ahy15g0974 780 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 239 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0974 Ahy-Chr15 14738797 14744093 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0974 596 755 Major Intrinsic Protein MIP AT1G31880 26.286 9.55e-10 59.3