Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0971 ATGGAGAATGGTGGTGAAATGATCAAGAAAATTAAAGGAAGACAAAAGAGAGATATAAAGAGGATTGAGAATAAGAAAAATTGTCAAATCGCTTTTACAAAGAGAAAAGATGGCTTACTGAAAAAGGCAAATGAAATAAAATATTTATGTGATGCTGGTGTTGATTTGATCATATATTCTTCAAGTGGAAAAGCCTATTGCTATGGCGATTCTTCGTTAAAGACAATAAAAATGGCTCTCTCAAACGAACAACAACCTCAAGATAGTAATCAGTTCCTTGGTTACATCATGGAGGAAATGTCTAGGATGGACATGCAGAATCTTGTTAAAAAGAACAATTCACTTGTGAATCGATTAAATGCTGAGAAAGAATGA 375 0.3307 MENGGEMIKKIKGRQKRDIKRIENKKNCQIAFTKRKDGLLKKANEIKYLCDAGVDLIIYSSSGKAYCYGDSSLKTIKMALSNEQQPQDSNQFLGYIMEEMSRMDMQNLVKKNNSLVNRLNAEKE* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0971 124 SUPERFAMILY SRF-like 13 77 IPR036879 GO:0003677|GO:0046983
Ahy15g0971 124 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Ahy15g0971 124 PANTHER SERUM RESPONSE FACTOR HOMOLOG 13 108 - -
Ahy15g0971 124 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Ahy15g0971 124 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
Ahy15g0971 124 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Ahy15g0971 124 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Ahy15g0971 124 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Ahy15g0971 124 Coils Coil 105 124 - -
Ahy15g0971 124 PANTHER MADS-BOX TRANSCRIPTION FACTOR 6 13 108 - -
Ahy15g0971 124 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0971 Ahy-Chr15 14693714 14694088 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0971 5 108 MADS-box Gene Family AT2G42830 43.860 9.56e-18 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ahy15g0971 SRF-TF 4.60E-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0971 K09264 - aip:107640209 248.825