Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0647 ATGTGCAAGGCACTTTCCCTCTTTCACTGCCCTACCTTCAAGTCTCTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCATGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGCAGGCAGAATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAGCCATCTCGTGGAATTGGTAAAAAGATTTTTGTTGGCCGACTTCCCCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCTCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCGAGTGAGAATTTTATGATGAATGGCGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1128 0.4521 MCKALSLFHCPTFKSLMEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPAGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSENFMMNGVGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0647 375 Gene3D - 102 209 IPR012677 -
Ahy15g0647 375 SMART rrm1_1 109 180 IPR000504 GO:0003723
Ahy15g0647 375 SMART rrm1_1 241 312 IPR000504 GO:0003723
Ahy15g0647 375 SMART rrm1_1 21 92 IPR000504 GO:0003723
Ahy15g0647 375 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 19 375 - -
Ahy15g0647 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 96 IPR000504 GO:0003723
Ahy15g0647 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 184 IPR000504 GO:0003723
Ahy15g0647 375 SUPERFAMILY RNA-binding domain, RBD 105 203 IPR035979 GO:0003676
Ahy15g0647 375 SUPERFAMILY RNA-binding domain, RBD 18 102 IPR035979 GO:0003676
Ahy15g0647 375 Gene3D - 239 320 IPR012677 -
Ahy15g0647 375 Gene3D - 13 101 IPR012677 -
Ahy15g0647 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 316 IPR000504 GO:0003723
Ahy15g0647 375 PANTHER OS01G0945800 PROTEIN 19 375 - -
Ahy15g0647 375 SUPERFAMILY RNA-binding domain, RBD 240 340 IPR035979 GO:0003676
Ahy15g0647 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 79 IPR000504 GO:0003723
Ahy15g0647 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 168 IPR000504 GO:0003723
Ahy15g0647 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 295 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0647 Ahy-Chr15 8614207 8618602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0647 21 309 Eukaryotic Initiation Factors Gene Family AT2G23350 26.174 4.11e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0647 K14411 - gmx:100795240 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0647 15 8614207 8618602 Ahy15g0647 15 8614207 8618602 ECH