Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0630 ATGACTACTACTTCATCAATTTCTGGCACTGATAATAATAATGCCGTACTATTTTTCGAAAATGTTTCTTCCTCATTTGCTGGCCCTATGGATCACAGAGAGGCTTCTATCATGCTCCCAATTAACAATAATAACGCTGGTGCTGAAATAATTTACATCAGTGACGAAGAACCAGATCTTGAATCATCATTGTCAGATGTCAACATTAATTCTGCCCCTTCAATTTTATCAACAACGGAACAAACCAATCAACCTACCTCAAATCTTTTAACATTACAAAGAAATTTGAGAATCAACACCGCCAACAACAACCACCAACAAGATGGTGTGTCACTCGATTTATCCTTACACCAGTTTGGCGGTGATGGTGGTGGCAGCTTTTCTACTATTGATGTCACCGATGGCGGCACTGGTGGTGGTGGTGGAGGTGGAGATGGTCTCTTGATGAGGGTTTTCAACAATACTTCGACTAGGCGTATCATGCCTATGAAAAGAACTGCACCTGATTACGCTCACCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGACGGTGGTGCTGGTGGTGGTTCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCATCGCAAATGAAAATGAGGCTGTGCGCATTTCATCATCATCATCTAATACCTGCACTTGTACTCCTTCTCCCACTTGCCCTCTCCATGCTTCCACCAATAATAATATTTCTTCATCTTCCAGGGAACAACGCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTCGTGTTCCTTCTAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCAGTCTGCCTCAATCAATTACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCATCCTTGGAGCACCGTGATTAGGCCAAGGGCTATTCCCTCTCTGTCTCTCCCTCACCGAGTTGGAGGAAGTAATAGAGAATCTGACACCGGAAACAACTATCCTTCTGGAAGGGGAATAATCACTGTGACTCACAATCGTGGAAACTCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCATGACGCGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTGCGAGCTTCTGCTATTGCTGAGGAGGCCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGAGCCGCAATGCCATTCAACATCTGCCTAGTGGAGACTCCGTTCGAGAACTCGAGGAGCTTTTAATCCTTGATTACTCCAACTTGCTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGCAGACGGGCAGCGAGTGACGAACCCTGATTTAAGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCAGGAAATTTTCCAAACTGTTGGTCAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGAAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGATGACGAGGAACATACTATGAGTTTATGA 1749 0.4597 MTTTSSISGTDNNNAVLFFENVSSSFAGPMDHREASIMLPINNNNAGAEIIYISDEEPDLESSLSDVNINSAPSILSTTEQTNQPTSNLLTLQRNLRINTANNNHQQDGVSLDLSLHQFGGDGGGSFSTIDVTDGGTGGGGGGGDGLLMRVFNNTSTRRIMPMKRTAPDYAHREFTVGESSSDGGAGGGSVAQPMAAPKRRPIANENEAVRISSSSSNTCTCTPSPTCPLHASTNNNISSSSREQRHETANNNNNPQNVVRVPSSLSPISEMQRALQSASINYMENLPHHQYAGSSSSSPSPHPWSTVIRPRAIPSLSLPHRVGGSNRESDTGNNYPSGRGIITVTHNRGNSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDATLTRMSSSSTTDNTHHRPLRASAIAEEAYNLPTYFADDSRRLRRESRNAIQHLPSGDSVRELEELLILDYSNLLASIEEEEDANLPQYEPLADGQRVTNPDLRLTETEVAACIGQEIFQTVGQQPQNIDACGICQKDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLEDDEEHTMSL* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0630 582 ProSiteProfiles Zinc finger RING-type profile. 522 563 IPR001841 -
Ahy15g0630 582 SMART ring_2 522 562 IPR001841 -
Ahy15g0630 582 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 200 567 - -
Ahy15g0630 582 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 200 567 IPR045191 GO:0061630
Ahy15g0630 582 MobiDBLite consensus disorder prediction 317 337 - -
Ahy15g0630 582 SUPERFAMILY RING/U-box 521 572 - -
Ahy15g0630 582 MobiDBLite consensus disorder prediction 323 337 - -
Ahy15g0630 582 MobiDBLite consensus disorder prediction 208 262 - -
Ahy15g0630 582 MobiDBLite consensus disorder prediction 177 262 - -
Ahy15g0630 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 505 567 IPR013083 -
Ahy15g0630 582 Pfam Ring finger domain 521 563 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0630 Ahy-Chr15 8207312 8210942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0630 436 567 C3H Transcription Factor Family AT2G15530 31.250 3.45e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0630 - - ahf:112747814 1107.05