LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g0528	ATGAATCATGCCTCAACTCAAATGATGAAGACCCTCCTAGATGCTGACACCTTTGTTAACTTGAACAATCAAAATAATATAGTAGGTGTTCCTTCACACCCTTCTTCTTCTGCTTCTGTAGAAGCAGTTCTACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGGTGAAAATGTTGGATGGTATCCACCACTCCCTGTCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGACATAGAAGCTCTCAGCAGAACAAAACAACAAGCACCAAAACTGGAGGATTTCTTTGGTGGGCAAAGCCAAGAATGCAACAACGCCAGAGAAGCACTGCCTCTGAGCTATAACATGTTTCACAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCAGAACCAGCAGCATGATGTTAACCAGCAACACTCATCATATTATTCTTCTGCATCAAGAAACAACAACAACCATCATCAGGTGATGCTACAAGGATACAATATGGTTAAGGAGGAAGTGCCTGGTATCCACCATGCAATGGAGGCAAAGCTGGTTGTTCCTTTGGAGGATAATAGAGGTGAATCGCTGTCCATTGGATCGGTGGCGTTCGGGGATTTACAGTCACTGAGGTTGTCCACGAGTCCAAGCTCCCAATCAAGTTGTGTCACAACCTCACAACAAGCATCACATGCTGTCATGAGCACTACAAAGAAGAGGGTGCATGATGAAATGGTGGAGCAGAACCAGAAGCAAATTGCTCATAGAAAATCCATTGATACCTTTGGCCAGAGAACATCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATACAAACTTCCCATTGGAAAATTATCAAAATGAACTTGTGCAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCTGCTGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAGGAGAAAAAGAGAGGTCATTGTTAATAATAACCATAAACCATCTACATATGATGAAGAATCGATTCTAATGCACAAGAGCTGCAAAAACCCTCAGATCATGATGATTAATCATCCACCAACAATGGCATTAGAGGAGGAATCAAGTAGTAAGATTGGAACACATATTTCAAATGAAGATAAGACAGGTTTGCCAATTCTCTATGGAAGACCTTCAACAACAGCAGCCTCTACTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACCACCATCACATCTGAGACCTAATAAGCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCATGGACAGACGCATAA	1689	0.421	MNHASTQMMKTLLDADTFVNLNNQNNIVGVPSHPSSSASVEAVLPPSFCCYYGVEGENVGWYPPLPVLPLKSDGSLFDIEALSRTKQQAPKLEDFFGGQSQECNNAREALPLSYNMFHNPNYLNHVQENINLLQNQQHDVNQQHSSYYSSASRNNNNHHQVMLQGYNMVKEEVPGIHHAMEAKLVVPLEDNRGESLSIGSVAFGDLQSLRLSTSPSSQSSCVTTSQQASHAVMSTTKKRVHDEMVEQNQKQIAHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQARRKREVIVNNNHKPSTYDEESILMHKSCKNPQIMMINHPPTMALEEESSSKIGTHISNEDKTGLPILYGRPSTTAASTRLLATIPTGWDQPPSHLRPNKLSLPQMPVFAAWTDA*	563

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g0528	562	SUPERFAMILY	DNA-binding domain	368	427	IPR016177	GO:0003677
	Ahy15g0528	562	CDD	AP2	266	333	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1	46	560	-	-
	Ahy15g0528	562	SMART	rav1_2	369	433	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	SMART	rav1_2	267	339	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	Gene3D	AP2/ERF domain	369	429	IPR036955	GO:0003700\|GO:0006355
	Ahy15g0528	562	Gene3D	AP2/ERF domain	266	335	IPR036955	GO:0003700\|GO:0006355
	Ahy15g0528	562	Pfam	AP2 domain	267	325	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	Pfam	AP2 domain	369	419	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	Coils	Coil	123	143	-	-
	Ahy15g0528	562	ProSiteProfiles	AP2/ERF domain profile.	369	427	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	ProSiteProfiles	AP2/ERF domain profile.	267	333	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	PRINTS	Ethylene responsive element binding protein signature	268	279	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	PRINTS	Ethylene responsive element binding protein signature	409	429	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	46	560	-	-
	Ahy15g0528	562	CDD	AP2	368	428	IPR001471	GO:0003700\|GO:0006355
	Ahy15g0528	562	SUPERFAMILY	DNA-binding domain	266	335	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g0528	Ahy-Chr15	6507264	6510483	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy15g0528	48	562	AP2-EREBP Transcription Factor Family	AT4G37750	49.731	8.03e-160	466

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-AP2	Ahy15g0528		AP2	1.00E-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy15g0528	K09285		-	gmx:100792451	584.719

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy15g0528	15	6507264	6510483	Ahy11g1078	11	29752022	29757730	PCT
	Ahy15g0528	15	6507264	6510483	Ahy1g1103	1	22752482	22758063	PCT
	Ahy11g1078	11	29752022	29757730	Ahy15g0528	15	6507264	6510483	PCT
	Ahy1g1103	1	22752482	22758063	Ahy15g0528	15	6507264	6510483	PCT