LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy15g0518	ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAACTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACGACGGCCACACCACCTCCTCCGTCAACCAAACCCAAGCCGTATTCCTGTCATCATGAGGCACCAGAGCCATCTCTAACGCTGGGTCTATCCGGCGAGAGCTTCCTGAAAAGCAATAATAATAAAGTCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGTAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCCAGAGTGAGCGACGAAGATGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGACAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAAGAGCTTCAAGAACTGAAGGCGCTGAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGGCTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA	840	0.5214	MGLDQDANNNNNNNSSSSGLELVLGLSLTTTTATPPPPSTKPKPYSCHHEAPEPSLTLGLSGESFLKSNNNKVAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC*	280

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy15g0518	279	ProSiteProfiles	'Homeobox' domain profile.	141	201	IPR001356	GO:0003677
	Ahy15g0518	279	SMART	halz	201	244	IPR003106	GO:0006355\|GO:0043565
	Ahy15g0518	279	SUPERFAMILY	Homeodomain-like	134	202	IPR009057	-
	Ahy15g0518	279	Coils	Coil	207	237	-	-
	Ahy15g0518	279	SMART	HOX_1	143	205	IPR001356	GO:0003677
	Ahy15g0518	279	MobiDBLite	consensus disorder prediction	116	150	-	-
	Ahy15g0518	279	CDD	homeodomain	145	202	IPR001356	GO:0003677
	Ahy15g0518	279	ProSitePatterns	'Homeobox' domain signature.	176	199	IPR017970	GO:0000981\|GO:0006355
	Ahy15g0518	279	Pfam	Homeodomain	145	199	IPR001356	GO:0003677
	Ahy15g0518	279	Gene3D	-	138	206	-	-
	Ahy15g0518	279	MobiDBLite	consensus disorder prediction	1	100	-	-
	Ahy15g0518	279	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE	15	279	-	-
	Ahy15g0518	279	Pfam	Homeobox associated leucine zipper	201	235	IPR003106	GO:0006355\|GO:0043565
	Ahy15g0518	279	MobiDBLite	consensus disorder prediction	1	34	-	-
	Ahy15g0518	279	MobiDBLite	consensus disorder prediction	61	99	-	-
	Ahy15g0518	279	PANTHER	-	15	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy15g0518	Ahy-Chr15	6247561	6249001	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy15g0518	1	279	Homeobox Transcription Factor Family	AT4G37790	55.732	5.15e-92	272

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Ahy15g0518		Homeodomain	1.90E-16	CL0123