Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0489 ATGCCACCAGTTCCACTTGCTCCCTACCCAACACCATCGGTTCCATATACTACGCCTCCATCAAATGGTGCACAGAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTACTGATGTATCCAGTTGGAGCCACGTCAGTGTGTTGTGCAGTTTGCAATGCAGTGACAGCAGTGCCACCACCTGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 447 0.4855 MPPVPLAPYPTPSVPYTTPPSNGAQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0489 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 66 95 IPR005735 -
Ahy15g0489 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 27 57 IPR005735 -
Ahy15g0489 148 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 104 133 IPR005735 -
Ahy15g0489 148 Pfam LSD1 zinc finger 69 93 IPR005735 -
Ahy15g0489 148 Pfam LSD1 zinc finger 107 131 IPR005735 -
Ahy15g0489 148 Pfam LSD1 zinc finger 30 54 IPR005735 -
Ahy15g0489 148 PANTHER PROTEIN LSD1 3 144 IPR040319 -
Ahy15g0489 148 PANTHER PROTEIN LOL1 3 144 - -
Ahy15g0489 148 SUPERFAMILY Multiheme cytochromes 30 128 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0489 Ahy-Chr15 5831576 5833325 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Ahy15g0489 zf-LSD1 8.90E-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0489 - - mnt:21406053 260.766