Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0198 ATGGAGGTGAAACTCACCGAATCGGCGATTACGAAGATGTGCGAGAATTCCAGTTCGGCTGAGGATCTGAAGCCGATTTTGCAAGTAATGGACTTCAAGCTTGTGCAGTCGCAACAGAACAATACCGAGAGGTTCCGTTTGGTTCTCTCTGATGGCTCCCATTACCAGCAAAGCATGCTCGCTACGCAGAAGAACGATTTGATCCATTCTGGCAAGTTGCAGAGAGGTTCTATCATCGTTCTCAATCAGTACACATGCAGCCTTGTCCAGGGCCGATCGATCATTATTATCATTGAACTAGATATTCTGTTGGACAAATGCGAGCTACTTGGAAAACCGGTCAGTGCAACAAAATTTGCTCCGTCACAATCTGCAACTGATCAATCAGGAATTACCTCTGGGAATAATGTGCCTGGTCCTTCTCCGGAACCCCCAAAAGTAAATCAACCTGCTAGTAGTGTTGGCTCTTCTAGTTTTGACATGGGGAGATTTGGTGCATCAAATGCCCCTCCTGCTTATCCAAAAGCAGAGCCTAGAGCTATGGGACCTAGTTCTGGCATTGCAGGTTATAGTTCAACAAATGTTCCTTTTACTTATCCTAAACCAGAGCCTGGAGCTACATTACCTAGATCAGGACAGTCTGGTGGGTCTTATGGTGATCAGAATGTGGGTTATCGCAATCCCCAATCTGAGGCATCAAGGCCCTTTCAAAATTCTTATGCTCGTCCACCTCAGCCCATGTATCGTCAGCCATCTCCGGTGTACAATAACAGAGGCCCTGCGGCAAGAAATGAAGCTCACCCTAGGATCATTCCAATAGCCGCATTGAATCCATACCAGAATAACTGGACAATTAAAGCTAGAGTAACAGCTAAGGGAGAACTCAGGCACTATAGTAGTGCCCGAGGTGATGGAAAAGTGTTTTCTTTTGATCTTCTTGATTCTGATGGTGGAGAAATCCGGGCAACTTGCTTTAATACTGTGGCTGATCAGTTTTACAATGTAATTGAAGCTGGAAATATCTATCTGCTTTCCAGGGGACATTTAAAGGCAGCAAATAAGGACTTCAATCACCTTCGTAATGATCAAGAACTGACCCTTGATATAGCCACCATTATACAACCGTGCCATGATGATGTGTCAATTCCACAGCAGACTTTTAACTTCCGTCCAATTATTGAAGTTGAAACTATTGAAAACAATACTATTTTGGATGTGATTGGTGTGGTGTCTTCTATTAGTCCTACTGCTTCAATTATGAGGAAAAATGGTACTGAAACTCAAAAGCGAACCCTCCAGTTAAAAGACATGTCTGGTCGAAGTGTTGAATTAACCATGTGGGGAAATTTTTGCAATGCAGAAGGACAAAGGCTACAAAGTCTCTGTGATGCTGGAAGATTTCCAGTTTTGGCTGCCAAAGCCGTCAGAGTAAGTGATTTCAACGGGAAGTCAGTTGGGACCATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTTGTGGATGCTTGTAGGCTGAGGGAATGGTTTGACAAGGAGGGGAGGAATGTTCCTACTATTTCTCTTTCCAGAGAAGCATCTAATTTTGGCAAGTCTGATGTGCGGAAGACCGTATCCCAGATTAAAGATGAGAAATTAGGGACATCTGAGAAGCCTGATTGGATATCTGTTTGTGCAAGTATTTCATACATGAAGGTTGATAACTTCTGCTACACAGCTTGCCCTGTCCTGATAGGTGACAGGCAATGCAACAAAAAAGTGACTAATAATGGAGATGGGAAATGGCGATGTGAAAGGTGTGATCAGACTGTTGATGCTTGTGATTATAGGTACATTCTGCAATTCCAGATTCAGGATCACACTGGCTTGACATGGGTTACTGCTTTCCAGGAGAGTGGCGAGGAGATCATGGGTATGTCTGCTAAAGAATTGTATAACCTTAAATTCGAACAAATGGATGATGAAAAATTTGCAGAAATCATGCGTAAGGTTCTCTTTGGTAAGTATATGTTCAAGTTGAAAGTAAAGGAGGAAACGTACAGTGATGAGCAGCGTGTCAAGTCGACGGTAGTAAAAGCAGAGAAAGTAAGCTTTCCATCTGAATCTAAATTTCTTCTGGATATGATTGATAAGCTTAAGTCTGAGAATGGAGAAGGTACCAATCCTAGCTCCATAGCTAATACTGCCGGACTAGTCAGCACTGGAACTGGACAATCTATGCCACCACCAGTTTACAATTCTGTGATGAGCAACAGTAGTGCCGGTATTGATTATAGAAACCAATATAGCAACTCTTTTGCTACTTCAACTGGTGCTCCTGCTCCTGCTTCATATATGTCATGTAGCATATGTGGTTGCTCTGGTCACAGCTCTGCACAATGCCCTAATAATATGATGAATATGCCTGCTCAGCCGGCAGCAAGAGGCGGTGGATTCACAAGCAGGGCATCTGCCGGATCAGGAGGAGCCTCCGGCGAATGCTTTAAATGCCATCAACCTGGCCATTGGGCAAAAGATTGCCCTGCTTACGGTGCAGCACCACCAGCTTATGGAAGCGCTAACGGAATGCAAGGTAGATATGGAATTGCCCCAAAGCAACAATATGGAGGATATTGA 2613 0.4386 MEVKLTESAITKMCENSSSAEDLKPILQVMDFKLVQSQQNNTERFRLVLSDGSHYQQSMLATQKNDLIHSGKLQRGSIIVLNQYTCSLVQGRSIIIIIELDILLDKCELLGKPVSATKFAPSQSATDQSGITSGNNVPGPSPEPPKVNQPASSVGSSSFDMGRFGASNAPPAYPKAEPRAMGPSSGIAGYSSTNVPFTYPKPEPGATLPRSGQSGGSYGDQNVGYRNPQSEASRPFQNSYARPPQPMYRQPSPVYNNRGPAARNEAHPRIIPIAALNPYQNNWTIKARVTAKGELRHYSSARGDGKVFSFDLLDSDGGEIRATCFNTVADQFYNVIEAGNIYLLSRGHLKAANKDFNHLRNDQELTLDIATIIQPCHDDVSIPQQTFNFRPIIEVETIENNTILDVIGVVSSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTMWGNFCNAEGQRLQSLCDAGRFPVLAAKAVRVSDFNGKSVGTIATSQLFVEPDFVDACRLREWFDKEGRNVPTISLSREASNFGKSDVRKTVSQIKDEKLGTSEKPDWISVCASISYMKVDNFCYTACPVLIGDRQCNKKVTNNGDGKWRCERCDQTVDACDYRYILQFQIQDHTGLTWVTAFQESGEEIMGMSAKELYNLKFEQMDDEKFAEIMRKVLFGKYMFKLKVKEETYSDEQRVKSTVVKAEKVSFPSESKFLLDMIDKLKSENGEGTNPSSIANTAGLVSTGTGQSMPPPVYNSVMSNSSAGIDYRNQYSNSFATSTGAPAPASYMSCSICGCSGHSSAQCPNNMMNMPAQPAARGGGFTSRASAGSGGASGECFKCHQPGHWAKDCPAYGAAPPAYGSANGMQGRYGIAPKQQYGGY* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0198 870 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ahy15g0198 870 MobiDBLite consensus disorder prediction 715 736 - -
Ahy15g0198 870 CDD RPA1N 9 92 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ahy15g0198 870 SUPERFAMILY Retrovirus zinc finger-like domains 771 841 IPR036875 GO:0003676|GO:0008270
Ahy15g0198 870 SUPERFAMILY Nucleic acid-binding proteins 387 516 IPR012340 -
Ahy15g0198 870 PANTHER REPLICATION PROTEIN A SUBUNIT 3 747 - -
Ahy15g0198 870 Gene3D - 3 117 IPR012340 -
Ahy15g0198 870 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 244 710 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy15g0198 870 MobiDBLite consensus disorder prediction 210 245 - -
Ahy15g0198 870 MobiDBLite consensus disorder prediction 148 163 - -
Ahy15g0198 870 SUPERFAMILY Nucleic acid-binding proteins 534 711 IPR012340 -
Ahy15g0198 870 CDD RPA1_DBD_C 537 710 IPR013955 -
Ahy15g0198 870 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Ahy15g0198 870 Pfam Replication protein A OB domain 392 495 IPR031657 -
Ahy15g0198 870 Gene3D - 269 379 IPR012340 -
Ahy15g0198 870 SUPERFAMILY Nucleic acid-binding proteins 269 381 IPR012340 -
Ahy15g0198 870 MobiDBLite consensus disorder prediction 119 252 - -
Ahy15g0198 870 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Ahy15g0198 870 CDD RPA1_DBD_A 272 375 - -
Ahy15g0198 870 Pfam OB-fold nucleic acid binding domain 283 355 IPR004365 GO:0003676
Ahy15g0198 870 MobiDBLite consensus disorder prediction 119 137 - -
Ahy15g0198 870 CDD RPA1_DBD_B 403 510 - -
Ahy15g0198 870 Gene3D - 520 711 IPR012340 -
Ahy15g0198 870 Gene3D - 777 845 - -
Ahy15g0198 870 SUPERFAMILY Retrovirus zinc finger-like domains 808 844 IPR036875 GO:0003676|GO:0008270
Ahy15g0198 870 PANTHER REPLICATION FACTOR A 1, RFA1 3 747 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ahy15g0198 870 SMART c2hcfinal6 779 795 IPR001878 GO:0003676|GO:0008270
Ahy15g0198 870 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Ahy15g0198 870 Pfam Replication factor-A C terminal domain 553 704 IPR013955 -
Ahy15g0198 870 Gene3D - 380 519 IPR012340 -
Ahy15g0198 870 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0198 Ahy-Chr15 2317132 2320700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0198 1 819 Core DNA Replication Machinery Family AT5G45400 49.309 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0198 K07466 - gmx:100778597 1093.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0198 15 2317132 2320700 Ahy15g0198 15 2317132 2320700 ECH