Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0099 ATGGGAAAAAAGAAACCAAAGGACCCTCCACAAACCGACTTAGCTTCGCCCCGTCCCGCCGCCGGCATTTTCTCCTCGCTCTTTGCCGCCGCACCGGAACCAAGCACCGCCCTCGCTTCCTTATTCTCCGACGACAACCCCTTTCGGAGAAAGCCCACTCAACCTTCTCAGGAATCAAACGAACAAACTCAAATCCCTAACAATGTCGGATCCGCACAACACGACACCGGCGAGGAGAAGAGGAAAAGGAAAACCTTAGAGGAGAAGCCCTCCGCCGATTCCGCAATCGAAGCTTCGGGGAAGAAGAGGAAGTACCACGAGTCAATTGAAGAGGCCAAAGGCTCTGACTTGGCAATTGAAAAGAACGATGAGGGGAAGGAGAAGAAGAAGAAGAAGAGGAAAAGAGAGGAGCTTGAGAAGGAGTGGGAGGAGAGGAAGTATGGTGCGGTGGTGGATGAAGAAAAAGAAGCGTCTGTGTTGGAGAACGGAAAAGTTGGGAACAAGAGGAAGTTGCTGCATAACCCTGCTGATATGATGGTATCGAAGGAAGGGTTTGATGATGAGGAGAAGCTCTTGAGAACGGTATTCGTTGGAAATTTGCCTCTCAAGGTGAAGAAGAAGACCCTGCTCAAAGAGTTCAAGAAGTTCGGTGAGGTTGAATCCGTGAGGATTCGTTCTGTTCCGATACAAGACACTAAAAAGCCTAGGAAGGGTGCTATCCTTGCGAAGAAAATCAATGATGCTGCTGATAGTGTTCATGCCTACATTGTTTTCAAAACGGAAGAATCTGCTCAGGCATCTTTGTCCCACAACATGGCAGTGGTTGAAGGGAATCATATTCGTGTTGATAGGGCATGCCCGCCCCGCAAGAAACTTAAAGGGGAGAGTACTCCACTTTATGATAACAAGAGAACTTTGTTTGTGGGCAACCTTCCATTTGATGTGAAGGATGAAGAATTATATCAGTTATTTTGTAGCATACCTAACCTGGGAACCAGTGTAGAAGCTGTAAGAGTTGTTAGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTGCTGTTTAAAACAAAGGAAGCTGCTAATTCTGCACTCAAGAAACGGAACCTGAAGCTTCGAGACCGAGAATTACGACTCAGTCATGCCAAGGCTGATTCCACTCCATCGAAAAAGCCAAAGCCAAAGCCAAAGCCATCACCAGCACAAGCTCCTGGCACCCCGGCCAAGAGAAAGTCTCTGGCTATGACGTCTCCTTCAAGCAGCATCAACAGGTCAAACAAAAAATTCAATGCATCTTACCAGGGTTTGCGTGCAACAAAATCTGATTTCAAGAAGAAAGCTCATGGAGTAGAAAAATCAAAAGGACGCTCGGAGAAACGACCATCAGTTGCTGCCAGAAAAGCCAAAGCAAAAATGCTCAAAGAAAGTGGTTCATCAAAACAAGCTGGGATGAAACGCAAGCTTGATAGTCGTACTCCAGATAGCTCCTTCAGAAATAAGAAGGTGAAGAAGAATAGGTAG 1524 0.4652 MGKKKPKDPPQTDLASPRPAAGIFSSLFAAAPEPSTALASLFSDDNPFRRKPTQPSQESNEQTQIPNNVGSAQHDTGEEKRKRKTLEEKPSADSAIEASGKKRKYHESIEEAKGSDLAIEKNDEGKEKKKKKRKREELEKEWEERKYGAVVDEEKEASVLENGKVGNKRKLLHNPADMMVSKEGFDDEEKLLRTVFVGNLPLKVKKKTLLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAKKINDAADSVHAYIVFKTEESAQASLSHNMAVVEGNHIRVDRACPPRKKLKGESTPLYDNKRTLFVGNLPFDVKDEELYQLFCSIPNLGTSVEAVRVVRDPHLNVGKGIAYVLFKTKEAANSALKKRNLKLRDRELRLSHAKADSTPSKKPKPKPKPSPAQAPGTPAKRKSLAMTSPSSSINRSNKKFNASYQGLRATKSDFKKKAHGVEKSKGRSEKRPSVAARKAKAKMLKESGSSKQAGMKRKLDSRTPDSSFRNKKVKKNR* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0099 507 Gene3D - 295 393 IPR012677 -
Ahy15g0099 507 CDD RRM2_RBM34 305 381 IPR034221 -
Ahy15g0099 507 MobiDBLite consensus disorder prediction 38 139 - -
Ahy15g0099 507 MobiDBLite consensus disorder prediction 413 438 - -
Ahy15g0099 507 MobiDBLite consensus disorder prediction 1 20 - -
Ahy15g0099 507 Coils Coil 501 507 - -
Ahy15g0099 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 237 IPR000504 GO:0003723
Ahy15g0099 507 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 378 IPR000504 GO:0003723
Ahy15g0099 507 MobiDBLite consensus disorder prediction 375 507 - -
Ahy15g0099 507 PANTHER RNA-BINDING PROTEIN 34 43 505 - -
Ahy15g0099 507 SUPERFAMILY RNA-binding domain, RBD 185 293 IPR035979 GO:0003676
Ahy15g0099 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
Ahy15g0099 507 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Ahy15g0099 507 MobiDBLite consensus disorder prediction 39 73 - -
Ahy15g0099 507 MobiDBLite consensus disorder prediction 375 393 - -
Ahy15g0099 507 SUPERFAMILY RNA-binding domain, RBD 303 446 IPR035979 GO:0003676
Ahy15g0099 507 MobiDBLite consensus disorder prediction 74 139 - -
Ahy15g0099 507 Gene3D - 188 292 IPR012677 -
Ahy15g0099 507 MobiDBLite consensus disorder prediction 440 501 - -
Ahy15g0099 507 Coils Coil 121 146 - -
Ahy15g0099 507 SMART rrm1_1 305 381 IPR000504 GO:0003723
Ahy15g0099 507 SMART rrm1_1 194 283 IPR000504 GO:0003723
Ahy15g0099 507 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 43 505 - -
Ahy15g0099 507 CDD RRM1_RBM34 193 283 IPR034220 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0099 Ahy-Chr15 1127031 1130225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0099 195 384 Eukaryotic Initiation Factors Gene Family AT1G22760 26.768 5.75e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy15g0099 15 1127031 1130225 Ahy15g0099 15 1127031 1130225 ECH