Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy15g0020 ATGGCGAGGGAGAAGATTCAGATAAAGAAGATCGACAACGCCACGGCCAGGCAGGTCACTTTCTCCAAGCGACGGAGAGGTCTCTTCAAGAAAGCGGAGGAGCTCTCCGTTCTCTGCGACGCCGATGTTGCCCTCATCATCTTCTCTTCCACCGGCAAGCTCTTTGACTACTCCAGCTCAAGTATGAAGGAAATACTTGAAAGGCATCATTTGCACTCAAAGAATCTGGCAAAGATGGAACAACCCTCTCTTGAGTTGCAGCTAGTTGAAAACAGCAACTACACCAGACTTAGCAAAGAAGTTGCTGAGAAGAGCCATAAACTAAGGCAGCTGAGAGGAGAGGATCTTCAGGGATTAAATATAGAAGAATTACAACAATTGGAGAGGTCTCTTGAAACTGGATTAGGCCGTGTAATAGAGAAGAAGGGAGAGAAGATTATGAGTGAGATCACTGACCTCCAAAGAAAGGGAATGCAATTGGTGGAAGAAAACGAGCGACTAAGGCGTCAAGTGGTGGAGATTACTCATGGGAAAGGGCATCATGGTGGTGGTGAATCTGAGATCATAGTTGGGGAGGAAGGCCAGTCTTCAGAGTCTGTTACAAACGTTTGCAACTACTCCAATAATAATACTAACAACAATAATAATGATAGTTCAGAAATTTCACTCAAGTTGGGGCTATCGTATTCTGGTTAA 696 0.4468 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKEILERHHLHSKNLAKMEQPSLELQLVENSNYTRLSKEVAEKSHKLRQLRGEDLQGLNIEELQQLERSLETGLGRVIEKKGEKIMSEITDLQRKGMQLVEENERLRRQVVEITHGKGHHGGGESEIIVGEEGQSSESVTNVCNYSNNNTNNNNNDSSEISLKLGLSYSG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy15g0020 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Ahy15g0020 231 Coils Coil 150 170 - -
Ahy15g0020 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 SUPERFAMILY SRF-like 3 82 IPR036879 GO:0003677|GO:0046983
Ahy15g0020 231 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 228 - -
Ahy15g0020 231 Coils Coil 94 114 - -
Ahy15g0020 231 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Ahy15g0020 231 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Ahy15g0020 231 Pfam K-box region 92 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy15g0020 231 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy15g0020 231 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ahy15g0020 231 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy15g0020 Ahy-Chr15 249439 255764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy15g0020 1 231 MADS-box Gene Family AT2G22540 67.901 1.64e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy15g0020 K-box 4.70E-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy15g0020 - - ahf:112747325 388.267