Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g3355 ATGGAATCGATATCTCCTAATAATATATTGGTACAATGCCGAATATGTCACAATGAAGATGAAGAGTCACACATGGAAACACCATGTTCATGTTCTGGCACCCTCAAGTATGTACATAGAAATTGTGTTCAAAGATGGTGCAATGAGAAAGGCGATACTACCTGTGAGATTTGCCTACAGCAATTTACACCCGGGTACACTGTACCCCCACCACTTATCCATTATGGTGGATCTCCAATAAATTTCGGATGGAACTATTGGGAGACTTCAAGAAGAGTTCACAATAACAACAATCAATTTGTATCAATGTTTGGTGCTGATCATCATGATCTAGAACCTGACATTGAATATTCAACACCCTCTACAAGGTCCATGATATGGTGCCGCATAATTGCCACTATTTTTCTTGGTCTTATTGTTTTAAGGCATACACTTCAAGTTATACTGATACTCAGTGAAACAGAAGAGTATTCATTAACAGTGTTTATGCTATTACTGTTGGGAATCCTTGGGATATTGATTTCAATACATACGATGATCAAAGCTAACTACTATGGCCCAAGGACTTCAACACCAGATTCATCATTCCCCTATTTCATCACGTGA 606 0.3828 MESISPNNILVQCRICHNEDEESHMETPCSCSGTLKYVHRNCVQRWCNEKGDTTCEICLQQFTPGYTVPPPLIHYGGSPINFGWNYWETSRRVHNNNNQFVSMFGADHHDLEPDIEYSTPSTRSMIWCRIIATIFLGLIVLRHTLQVILILSETEEYSLTVFMLLLLGILGILISIHTMIKANYYGPRTSTPDSSFPYFIT* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g3355 201 SUPERFAMILY RING/U-box 11 63 - -
Ahy14g3355 201 Pfam Protein of unknown function (DUF3675) 64 182 IPR022143 -
Ahy14g3355 201 CDD RING_CH-C4HC3_MARCH 13 58 - -
Ahy14g3355 201 Pfam RING-variant domain 13 58 IPR011016 GO:0008270
Ahy14g3355 201 SMART ringv_2 12 59 IPR011016 GO:0008270
Ahy14g3355 201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 67 IPR013083 -
Ahy14g3355 201 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 5 183 IPR033275 -
Ahy14g3355 201 ProSiteProfiles Zinc finger RING-CH-type profile. 5 65 IPR011016 GO:0008270
Ahy14g3355 201 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 5 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g3355 Ahy-Chr14 142216328 142219338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g3355 12 58 C3H Transcription Factor Family AT2G37950 48.000 1.93e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g3355 - - gmx:100784696 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3355 14 142216328 142219338 Ahy14g3355 14 142216328 142219338 ECH
Ahy14g3355 14 142216328 142219338 Ahy4g2990 4 127780798 127783808 hybridization