LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy14g3271	ATGGCAGCTTCATATTTCAAGTATGATGTTTTTCTGAGCTTCAGAGGCCACACAAGACGCGAATTCACAGACGCACTCTATCATGCTTTGGTCAACAAAAGAATCGAGACTTTCAGAGATAGCGAGAATCTCAGAATAGGTGAGGAACTGGAAGGTGCTCTTCTAGAAGCAATTGAAAGATCAAGGATGTCAATTCTTATACTGTGTGATGAGTATCCAACTTCCAAGTGGTGCCTTGATGAACTCGTCAAGATCATGGAGTGTTCCGGCAACGGAACAAAGCGACCGGTGTTACCGGTCTATTTCCGTGTGGCAAAATCAGATGTGCAGTTTCAGAAAAATAAGTATGAAACAGCCATGGCTGCTCATCAAGCAAAAGGAAGAAACAACCACAAGTTGGAAGCATGGAAGTCAGCGTTGTCTGAAGTAGGCAAGATTTATGGTCAACTTTGTGATCAGAAAACAGCATGGGGTGAGGCTATTGACAACATTGTTGAAGAGGTCACAAAAAGACTTCCTCCTTTGCCTCTGTATATCGACCGTCCACTTGGATGTGATTCTGAACTTGAGGAGGCAAAATCACTTCTAGAGATTGGTTCTCATGCTACCTGTTTCATGCTGGGAATTCATGGAGATGGTGATGAAATAAACAAATTTGTTGCGGAGCTCTATAACAAGATTAGGCCTCACTTTGTAACTGCAAGTTTTCTTTCCAATATCAGTGAGAAAACAAACGAAAGTGGTGGTGGCCTAGAACATCTACAAGAAACTCTTCTTTCTGAGATGGGAGAGGAGGTCAGGACTAAGATTGGAAGCACATTCAAAGGATCCTCTGAAATTAAACAAAGACTAGGCCAAAAAAGAGTTCTTCTGGTTTTGGATGATGTTGATAATATACAACAACTGGATTCACTAGCTAGAAGAATGGATTGGTTTGGTCCTGGTAGTAGGATCATTATAACAACAAGATATGAAGATGTGCTAGATGATCATATTTTGAACAATTGTGTTGAGGTTAAGAAATATTGCATCGCTGAAGGAAGTAGTTCTACTGTGAAGGAAGAAAATGTAGTGGGATTGGAGAAAGATTTTGAAATTGTGATTAATCAACTCAAGGAAGAAGATTCTCCTGGGAATGTTGTTTCCATTGTTGGCATGGGTGGGTTAGGCAAGACCACCCTTGCTCGAAAGATCTACAATAGCGATGAGGTGAAGATGTTATTCCCTTGCCGTGCATGGGCAACTGTTTCCAAGGATTACAGTGGAAAGGAAGTTTTTAAGAGCCTTTTCAAGTGTCTGAAGCCGTCTGCATCTAAATTTGAAGATTCAAGTAGTGAAGAGGAGCTAAAGCAGAAGGTGAAGAAATGTCTGGAAGGAAAAAAGTACTTGGTAGTCCTTGATGATGTTTGGGACAGTAAAGCATGGCGCACTATAAAGAATTGTTTCCCAGAAAACAACAATGGTGGCATGATACTAGTAACTACTCGTAATGATCAGGTGGCTTATGTTTCAGAGTCAAAGAAACCTCATCACAAGCTTTCCTTTATGGATAAAGAAAGAAGTTGGGAACTGTTTCACAAGGAGGTTTTCTGCAGAAGAAATTGTCCTCCTGAGCTAGAATCTATTGGCAGATCAATTGTTGAAACTTGCAAGGGTTTACCAAGATAA	1668	0.4065	MAASYFKYDVFLSFRGHTRREFTDALYHALVNKRIETFRDSENLRIGEELEGALLEAIERSRMSILILCDEYPTSKWCLDELVKIMECSGNGTKRPVLPVYFRVAKSDVQFQKNKYETAMAAHQAKGRNNHKLEAWKSALSEVGKIYGQLCDQKTAWGEAIDNIVEEVTKRLPPLPLYIDRPLGCDSELEEAKSLLEIGSHATCFMLGIHGDGDEINKFVAELYNKIRPHFVTASFLSNISEKTNESGGGLEHLQETLLSEMGEEVRTKIGSTFKGSSEIKQRLGQKRVLLVLDDVDNIQQLDSLARRMDWFGPGSRIIITTRYEDVLDDHILNNCVEVKKYCIAEGSSSTVKEENVVGLEKDFEIVINQLKEEDSPGNVVSIVGMGGLGKTTLARKIYNSDEVKMLFPCRAWATVSKDYSGKEVFKSLFKCLKPSASKFEDSSSEEELKQKVKKCLEGKKYLVVLDDVWDSKAWRTIKNCFPENNNGGMILVTTRNDQVAYVSESKKPHHKLSFMDKERSWELFHKEVFCRRNCPPELESIGRSIVETCKGLPR*	556

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy14g3271	555	Pfam	TIR domain	7	170	IPR000157	GO:0007165
	Ahy14g3271	555	Gene3D	-	170	334	IPR027417	-
	Ahy14g3271	555	PRINTS	Disease resistance protein signature	550	555	-	-
	Ahy14g3271	555	PRINTS	Disease resistance protein signature	380	395	-	-
	Ahy14g3271	555	PRINTS	Disease resistance protein signature	456	470	-	-
	Ahy14g3271	555	SMART	till_3	7	146	IPR000157	GO:0007165
	Ahy14g3271	555	Pfam	NB-ARC domain	361	554	IPR002182	GO:0043531
	Ahy14g3271	555	Pfam	NB-ARC domain	252	342	IPR002182	GO:0043531
	Ahy14g3271	555	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	350	554	IPR027417	-
	Ahy14g3271	555	Gene3D	-	516	554	IPR042197	-
	Ahy14g3271	555	ProSiteProfiles	TIR domain profile.	6	172	IPR000157	GO:0007165
	Ahy14g3271	555	Gene3D	-	2	169	IPR035897	-
	Ahy14g3271	555	Gene3D	-	335	510	IPR027417	-
	Ahy14g3271	555	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	448	554	-	-
	Ahy14g3271	555	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	14	331	-	-
	Ahy14g3271	555	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	148	IPR035897	-
	Ahy14g3271	555	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	173	334	IPR027417	-
	Ahy14g3271	555	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	448	554	IPR044974	GO:0006952
	Ahy14g3271	555	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	14	331	IPR044974	GO:0006952

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy14g3271	Ahy-Chr14	141508888	141512480	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy14g3271	55	340	WRKY Transcription Factor Family	AT4G12020	28.028	3.99e-18	86.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy14g3271	-		-	ahf:112744827	1117.83