LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy14g3055	ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTAACGTTTTCAAAGAGGAGAACGGGGCTTCTCAAGAAAGCACACGAAATCTCTGTGCTCTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCATCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAAAGACAGGCTCATGCTGAATTTGCTAGCACAAACGATGAACCACAGGGAAACTGGTCTTATGAATGCATCAAGCTCACCGCCAAAATTGAAGTATTAGAGAAGAACATTAGGAATTTTGTGGGAAATGATCTGGACCCGTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGCAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGAACCAAGTCATGAATCAATCCATCTCGGAGCTGAACAAAAGGGCAAGGCAATTGCAGGAGCAAAACAGTTTGTTAGCAAAGAAGATGAAAGATAAAGAGAAGACAATGAGTGAAGGTCCACAAGTCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTGTCTTCTCAAGATCACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGAGAATACTGGAAGAAACAGTTGAAGCTCAAGATGGTGCTGGTGGCAGCACTGTGATCCCACCATGGATGCTTCAACATTTGACAAGCTAA	738	0.4295	MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFASTNDEPQGNWSYECIKLTAKIEVLEKNIRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKNQVMNQSISELNKRARQLQEQNSLLAKKMKDKEKTMSEGPQVCLETLGKSTPNINLSSQDHLPPQRLVPCLNLSGRILEETVEAQDGAGGSTVIPPWMLQHLTS*	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy14g3055	245	Coils	Coil	123	176	-	-
	Ahy14g3055	245	Gene3D	-	13	84	IPR036879	GO:0003677\|GO:0046983
	Ahy14g3055	245	SUPERFAMILY	SRF-like	2	88	IPR036879	GO:0003677\|GO:0046983
	Ahy14g3055	245	PANTHER	MADS BOX PROTEIN	1	222	-	-
	Ahy14g3055	245	Pfam	K-box region	84	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Ahy14g3055	245	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	CDD	MADS_MEF2_like	2	76	IPR033896	GO:0000977\|GO:0045944
	Ahy14g3055	245	PANTHER	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1	1	222	-	-
	Ahy14g3055	245	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Ahy14g3055	245	ProSiteProfiles	K-box domain profile.	86	176	IPR002487	GO:0003700\|GO:0005634\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy14g3055	Ahy-Chr14	139331702	139344462	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy14g3055	1	221	MADS-box Gene Family	AT1G26310	51.739	2.70e-74	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Ahy14g3055		K-box	3.20E-27	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy14g3055	K09264		-	gmx:100788956	300.056

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ahy14g3055	14	139331702	139344462	Ahy11g2048	11	130202440	130208756	ECH
	Ahy14g3055	14	139331702	139344462	Ahy20g2407	20	128895882	128903684	ECH
	Ahy14g3055	14	139331702	139344462	Ahy14g3055	14	139331702	139344462	ECH
	Ahy14g3055	14	139331702	139344462	Ahy4g2695	4	124965823	124978163	hybridization
	Ahy20g2723	20	137287774	137298588	Ahy14g3055	14	139331702	139344462	PCT
	Ahy14g3055	14	139331702	139344462	Ahy10g2204	10	110824806	110846673	PCT