Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g3054 ATGGGAAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGGAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACACTCGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTATCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGTCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGCTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATGCTGCTCCACATAATGCTCACTCTTCTCAAGGCTTCTTCCAACCTCTGGAATGCAACCCCACTTTGCAGATTGGCAGTGACTATAGGTACAATGGGGTAGGGTCAGATCAGATAACTGCTACAACAACTCAAGCTCAACAAGTGAGTGGTTTTATCCCTGGATGGATGCTTTGA 759 0.4203 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYAAPHNAHSSQGFFQPLECNPTLQIGSDYRYNGVGSDQITATTTQAQQVSGFIPGWML* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g3054 252 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Ahy14g3054 252 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 238 - -
Ahy14g3054 252 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy14g3054 252 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 238 - -
Ahy14g3054 252 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Ahy14g3054 252 Coils Coil 84 107 - -
Ahy14g3054 252 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ahy14g3054 252 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Ahy14g3054 252 Coils Coil 124 144 - -
Ahy14g3054 252 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Ahy14g3054 252 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g3054 Ahy-Chr14 139311563 139316915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g3054 1 252 MADS-box Gene Family AT5G15800 70.229 3.68e-123 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Ahy14g3054 K-box 1.90E-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g3054 K09264 - gmx:100786066 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g3054 14 139311563 139316915 Ahy11g2047 11 130139630 130147632 ECH
Ahy14g3054 14 139311563 139316915 Ahy20g2409 20 128926456 128935336 ECH
Ahy14g3054 14 139311563 139316915 Ahy14g3054 14 139311563 139316915 ECH
Ahy15g1919 15 91972906 91996573 Ahy14g3054 14 139311563 139316915 ECH
Ahy14g3054 14 139311563 139316915 Ahy4g2694 4 124950783 124956204 hybridization
Ahy20g2721 20 137224860 137232192 Ahy14g3054 14 139311563 139316915 PCT
Ahy10g2203 10 110788249 110795529 Ahy14g3054 14 139311563 139316915 PCT
Ahy14g3054 14 139311563 139316915 Ahy20g2721 20 137224860 137232192 PCT
Ahy14g3054 14 139311563 139316915 Ahy10g2203 10 110788249 110795529 PCT