Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g2953 ATGTTTATGAGTATGGCTATGGCTACGTCTCGTTGTTTGGTTCCTTTGGTCATTTTCATGTATTCCTTAGCCATTTCAGGTGCCATTGATGGTAATTGGTATGATGCTCATGCAACATTCTATGGTGACATACGAGGTGGAGAAACCATGAATGGTGCATGTGGATATGGGAATTTATTTGAACAAGGGTATGGACTTGCAAACACAGCACTAAGCACTGCTCTATTCAACCGTGGACTAACATGTAGTGCATGTTTTGAGATCCAATGTGTGAATGATCCACAATGGTGTATTAAGGGTGCAGGAACAATCAAAGTAACAGCAACAAATTTTTGTCCTCCAACTAACGAAAAAGGTCGTCCACCATGGTGTAACCCTCCACAAAAGCACTTCGATTTGTCCATGAAAATGTTCACAACAATAGCAAACTACAAAGCAGGGATAATCCCAGTTCGTTATAGGCGCACTCCGTGCATTAAACATGGTGGTGTCAGGTTTGAGTTGAAGGGTAACCCTCATTGGTTGCTAGTGTTGGTTTTTAATGTTGCAAATGCTGGTGATGTTACAAATGTTAAAATATCAGGTTCAACCGCACGTGCATGGATTCCTATGACACGTAATTGGGGGCAAAATTGGCAAACTGGTACTCCATTGGCTGGACAAGCATTGTCTTTTGGCAACTACTCCCATGAAGATGGCAAAAACATCTTCTCATGA 717 0.417 MFMSMAMATSRCLVPLVIFMYSLAISGAIDGNWYDAHATFYGDIRGGETMNGACGYGNLFEQGYGLANTALSTALFNRGLTCSACFEIQCVNDPQWCIKGAGTIKVTATNFCPPTNEKGRPPWCNPPQKHFDLSMKMFTTIANYKAGIIPVRYRRTPCIKHGGVRFELKGNPHWLLVLVFNVANAGDVTNVKISGSTARAWIPMTRNWGQNWQTGTPLAGQALSFGNYSHEDGKNIFS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g2953 238 Gene3D - 21 158 IPR036908 -
Ahy14g2953 238 PANTHER EXPANSIN-A21-RELATED 18 227 - -
Ahy14g2953 238 SUPERFAMILY PHL pollen allergen 160 234 IPR036749 -
Ahy14g2953 238 Gene3D - 163 238 IPR036749 -
Ahy14g2953 238 SMART dpbb_1 68 153 IPR007112 -
Ahy14g2953 238 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Ahy14g2953 238 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Ahy14g2953 238 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Ahy14g2953 238 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Ahy14g2953 238 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Ahy14g2953 238 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
Ahy14g2953 238 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 238 IPR007117 -
Ahy14g2953 238 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 210 231 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Ahy14g2953 238 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Ahy14g2953 238 Pfam Expansin C-terminal domain 164 236 IPR007117 -
Ahy14g2953 238 SUPERFAMILY Barwin-like endoglucanases 32 181 IPR036908 -
Ahy14g2953 238 PANTHER EXPANSIN-A15 18 227 IPR002963 GO:0009664
Ahy14g2953 238 Pfam Lytic transglycolase 69 153 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g2953 Ahy-Chr14 138241993 138243647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g2953 26 225 Expansin Gene Family AT5G39270 64.500 5.86e-95 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g2953 - - qsu:112027340 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2953 14 138241993 138243647 Ahy14g2953 14 138241993 138243647 ECH
Ahy14g2953 14 138241993 138243647 Ahy4g2604 4 123999072 124000421 hybridization