Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g2948 ATGTTTATGTTTTCGTCCTCCATAACCAAACCCCTTACCCCTTTCTATTCTTATGCAAACGAAATTGAAATCCCTAATCATAACAAAATCCTTAGCATCATCATAGCCATAGCCATGGACTACACCACTTGGCCTGAATTTCAGCATGCCCAAACCCAAACCCCAACACTACCCTCTTCATCTTCATTATATTCATACTCATACCCTCCTCTTCCATCTTCATCATCGTACACCGCCAATTTCGTCCCTTACCCTCAAAACCCTAACCCTCCTTCTTCAATTCCTCCCAACACTGTTTTAGAACCTGTGGTCAACCCTCCGGGTGTTGATTCCTATGTTCCTCCATTGCCATTGCCAACAACCCAAGTTGTTGGTGGTCCTGAACAACTTCTTCCCCAAAATTACTCATACACCCAAACCCAAACCCAAATTGTGGGTAATGACCCTAATTCGTTGGTGGCTTCTTCTGGGTACTACTATGATCCCAATGCTCAAAATTGGGGTGATACTGCTGGAGGAGCTGTTATACAATATGGTTCTGACCCTCTTGCTTATGGAGATGTGATCTCTATGGCATCAAATGGCACAGAACAGTTGGCTGTTGCAAATACTAATCCCGCTGCATGGTGGACCAATACAGCTATGCAAGTTCAAGCACAACCTCTTGGCAATAATAAATGGAAGCAGCTGCTGAAGAAGAAACCTAAAACTGTGAATGTTCAACCTGCATATTGCGAAGTTTGCAAGATAGATTGCACCAGCAAAGAGGTATTGGATCAACATAAATTAGGAAAGAAGCACAAGAAGAACGTAGAGAAACTAAGAGAATTATTAAGACCACCCCAGCCACAAGTCCATCCACCGGCCGATGGGTCATCTAATCCGGTTATAGGGCCACAATTGTGGAATAAGTGTAAGAGGAAATCAATTGAAACTCCAGAGAATCTGGAGAAAAAGAAGAAGAAAGTTCTCGAAGGAGGAGCAGCGGCCGCAGCAGTTAAAGTATGTTCTATATGTAATGTGGTATGTAATAGTGAAACAGTTTATAATTTCCACCTTCGCGGACAAAAGCATGCTGCCATGTTGAAGAAAGCATCTGAAAATATACTATCCAATGGAAAATGA 1125 0.4249 MFMFSSSITKPLTPFYSYANEIEIPNHNKILSIIIAIAMDYTTWPEFQHAQTQTPTLPSSSSLYSYSYPPLPSSSSYTANFVPYPQNPNPPSSIPPNTVLEPVVNPPGVDSYVPPLPLPTTQVVGGPEQLLPQNYSYTQTQTQIVGNDPNSLVASSGYYYDPNAQNWGDTAGGAVIQYGSDPLAYGDVISMASNGTEQLAVANTNPAAWWTNTAMQVQAQPLGNNKWKQLLKKKPKTVNVQPAYCEVCKIDCTSKEVLDQHKLGKKHKKNVEKLRELLRPPQPQVHPPADGSSNPVIGPQLWNKCKRKSIETPENLEKKKKKVLEGGAAAAAVKVCSICNVVCNSETVYNFHLRGQKHAAMLKKASENILSNGK* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g2948 374 SUPERFAMILY beta-beta-alpha zinc fingers 239 275 IPR036236 -
Ahy14g2948 374 Gene3D Classic Zinc Finger 228 277 - -
Ahy14g2948 374 PANTHER - 83 366 - -
Ahy14g2948 374 Gene3D Classic Zinc Finger 310 366 - -
Ahy14g2948 374 Pfam Zinc-finger of C2H2 type 335 358 - -
Ahy14g2948 374 Pfam Zinc-finger of C2H2 type 244 267 - -
Ahy14g2948 374 PANTHER ZINC FINGER RNA-BINDING PROTEIN 83 366 - -
Ahy14g2948 374 SMART ZnF_U1_5 240 274 IPR003604 GO:0003676|GO:0008270
Ahy14g2948 374 SMART ZnF_U1_5 331 365 IPR003604 GO:0003676|GO:0008270
Ahy14g2948 374 SUPERFAMILY beta-beta-alpha zinc fingers 333 364 IPR036236 -
Ahy14g2948 374 SMART c2h2final6 334 358 IPR013087 -
Ahy14g2948 374 SMART c2h2final6 243 267 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g2948 Ahy-Chr14 138214434 138216198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g2948 245 374 C2H2 Transcription Factor Family AT5G61190 30.405 4.24e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2948 14 138214434 138216198 Ahy4g2599 4 123975008 123976810 hybridization