LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ahy14g2906	ATGGGTTGTGTTAACTCCAAGAAGGCTCGTGCCGGAGATCCATCTGCTTCGCCGGCCGACGATGGCGTAGCATACGTCAAATCCTATTCGCGGAGAGGCAGACTCGCCTCCGGTCGCGTTGGGGCGGTGGTGTCTTCTTCCCCCGCTTCCAGGGGCCGTTCTTCGACCTCCGCGGTGGTTGCCGGTGAGGCTGCGGAGGTCCGGGAAGGAGGTGGTGACGCGAAACGCGACGAGGCGGCGGCTGCGGAGAAGCTTGAGAAGAAGAGTAGTAAGGATATGGTGGTGAGGGAGAATGGGAATGGGAATAATGGTGGGAGAGGGAGCTCGAGGCAAATTGGGGCATTGAATGCGAGGATTGGTTTGTCGCATAGGTTTGTGGAAGCTGAAAGCATTGCTGCTGGTTGGCCACCGTGGCTCACATCTGTTGCCGGTGAAGCCATTCACGGCATGGTTCCTCTCAAAAGTGATGCTTTTGAGAAATTGGACAAGATTGGACAAGGCACATACAGCAGCGTTTTCCAAGCACGTGAAGTTCATAGTGGGAGGATGGTTGCCTTGAAGAAGGTGCGCTTTGACAATTTCCAACCGGAGAGTATTAGGTTCATGGCAAGAGAGATTATAATCCTCCGTGCACTTGACCATCCAAACGTCATGAAATTGGAGGGCATAATCACTTCCCAACTTTCACACAGCATCTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTTCTCCGGACATCAAGTTCAGTGAATCACAGATTAAATGTTACATGAGGCAGCTATTAAGTGGCATGGAGCATTGTCACCTTAGAGGTATTATGCATAGAGACATTAAAGTTTCCAATATATTAGTGAACAATGACGGTGTTCTCAAGATTGGAGACTTTGGATTAGCAAATACACTTAGCCCAAACAACAAGAACCCTTTAACAAGTCGTGTGGTGACTCTTTGGTATCGCGCTCCGGAGCTCTTGATGGGTTCAACGAATTATGGAGTTTCAGTGGATCTATGGAGTGTCGGCTGCGTATTCGCAGAACTTTTCCTGGGGAAACCAATCCTTAAGGGAAGAAATGAGGTTGAACAATTGCACAGAATCTTTAAGCTTTGTGGATCTCCACCAGAAGAGTTCTGGAGAAAGTGTAAGCTTCCTCTTGCAACAATGTTTAAACCGCAGACTACCTACGAAAGCTCTCTTTGGGAGAGGTGTAAAGGTTTTCCTCCAACTGCTGTAAGCCTAATTGAGACTTTACTGTCCATTGATCCTTCCGAGCGTGGCACTGCCTCCTCTGCACTGATGTCTGAGTATTTTAGCACAAAGCCGCATGCTTGCAGTCCATCACTCCTTCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAAATACCGGGATGATGCACAGAGGAAAAAGGTTGGAGTGGCTCGTGAGGCTGCGACGACAGCAAAAAGGCCAAAACGGGTCCAGAAAGTTTTGGATTGCCCCAACAATAATAATAAAACAGCTACAAAAGAGAACAATGCTCAAAATGGTGGCAGAGATGATAAAGTATATCAGACAAAGGGAAGAATCGGACTTGTGCAGCAGAAAGAGATGCAACATAAACCAATGTTTGATGCTAAGTCAGAGGCTGCCAAAACAAATGGTTCTCATGGCTATAGTGTATACTCAGGTCCGGCACCGGCCTCGGGATCTACCGGCTTTACTTGGGCTACTAAGAGGCGAAAAGATGCTGCTTCAACTTTATCAGATGGCTCAAGAAGTAAAATCAGTGGACTTGATCCAAACTTCGCCAAAGGAACATATGATTTAGCAAGACAAGGGATTGATGTTTCACAAAGAAATCGTAGTTACACAAACTTTCAAGATGAAACACATCAAGAATCATTTGATGGAGCTGATGAGTACTTGGATTATGATCCCACAGAAAAAGCAGATTCTATGATAAGTACTCAGGGCAACATTAATGAAGACTTGCATTTTGAGAATGGCATGAGAAGAGGAGCCAGAAAATCACGGTTTGGTTGA	2040	0.4652	MGCVNSKKARAGDPSASPADDGVAYVKSYSRRGRLASGRVGAVVSSSPASRGRSSTSAVVAGEAAEVREGGGDAKRDEAAAAEKLEKKSSKDMVVRENGNGNNGGRGSSRQIGALNARIGLSHRFVEAESIAAGWPPWLTSVAGEAIHGMVPLKSDAFEKLDKIGQGTYSSVFQAREVHSGRMVALKKVRFDNFQPESIRFMAREIIILRALDHPNVMKLEGIITSQLSHSIYLVFEYMEHDLAGLVSSPDIKFSESQIKCYMRQLLSGMEHCHLRGIMHRDIKVSNILVNNDGVLKIGDFGLANTLSPNNKNPLTSRVVTLWYRAPELLMGSTNYGVSVDLWSVGCVFAELFLGKPILKGRNEVEQLHRIFKLCGSPPEEFWRKCKLPLATMFKPQTTYESSLWERCKGFPPTAVSLIETLLSIDPSERGTASSALMSEYFSTKPHACSPSLLPKYPPSKEMDAKYRDDAQRKKVGVAREAATTAKRPKRVQKVLDCPNNNNKTATKENNAQNGGRDDKVYQTKGRIGLVQQKEMQHKPMFDAKSEAAKTNGSHGYSVYSGPAPASGSTGFTWATKRRKDAASTLSDGSRSKISGLDPNFAKGTYDLARQGIDVSQRNRSYTNFQDETHQESFDGADEYLDYDPTEKADSMISTQGNINEDLHFENGMRRGARKSRFG*	680

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	496	518	-	-
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	68	94	-	-
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	1	110	-	-
	Ahy14g2906	679	SUPERFAMILY	Protein kinase-like (PK-like)	153	446	IPR011009	-
	Ahy14g2906	679	ProSitePatterns	Protein kinases ATP-binding region signature.	164	187	IPR017441	GO:0005524
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	95	110	-	-
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	496	520	-	-
	Ahy14g2906	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	278	290	IPR008271	GO:0004672\|GO:0006468
	Ahy14g2906	679	PANTHER	CYCLIN-DEPENDENT KINASE	105	614	-	-
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	43	57	-	-
	Ahy14g2906	679	PANTHER	CELL DIVISION PROTEIN KINASE	105	614	-	-
	Ahy14g2906	679	SMART	serkin_6	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy14g2906	679	ProSiteProfiles	Protein kinase domain profile.	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy14g2906	679	Gene3D	Transferase(Phosphotransferase) domain 1	241	482	-	-
	Ahy14g2906	679	Pfam	Protein kinase domain	158	442	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Ahy14g2906	679	Gene3D	Phosphorylase Kinase; domain 1	148	240	-	-
	Ahy14g2906	679	MobiDBLite	consensus disorder prediction	656	679	-	-
	Ahy14g2906	679	CDD	STKc_CDK9_like	158	442	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ahy14g2906	Ahy-Chr14	137775965	137780608	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ahy14g2906	156	480	Core Cell Cycle Gene Families	AT5G10270	46.921	3.59e-104	325

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Ahy14g2906		Pkinase	7.40E-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ahy14g2906	-		-	lja:Lj1g3v2982400.1	810.061