Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g2546 ATGTCCATGTCTTCAACCTCATCATTCCTCAACCACCTTGGCCTTGGCTACTCCATAGCCATAGCCCTTGCTTTCCTCGTTCTCCTCTCCACCCTCATCTTATCTTCTTACCTCTGCTGTAACCGCAACCGTAACCGCAACCCTCACAATAATAATAACAACTCCACCACCACCCACCGTGACGGCGTCGTTCTCCCGCGAATAATCTTCGTCGCAGAAGGCGATGATGACGAAGACGGAGACGAAGAGCGCGGCGCGGTGGGGTTGGAACAGAACGTGATAAACTCGTATCCGAGGTTTCAGTTCAGCAGGGACAGCAGTAATATCGGACAGAACACCACGTGTTCCATATGTCTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCAGAGTGCAGGCACTATTTCCACGTCTGCTGCCTTGACTCCTGGCTTAGGCTTAATGGCTCCTGCCCCGTTTGCCGGAACTCGCCGCTTCCGACGCCGGTTCCCACGCCGCTGTCGACGCCGCTGCAGGAGGTGGTGCCGCTGTCTCAGTATGCTGCTGATAGGAGGAGGAGGTGA 570 0.5491 MSMSSTSSFLNHLGLGYSIAIALAFLVLLSTLILSSYLCCNRNRNRNPHNNNNNSTTTHRDGVVLPRIIFVAEGDDDEDGDEERGAVGLEQNVINSYPRFQFSRDSSNIGQNTTCSICLCEYKDSEMLRMMPECRHYFHVCCLDSWLRLNGSCPVCRNSPLPTPVPTPLSTPLQEVVPLSQYAADRRRR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g2546 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 161 IPR013083 -
Ahy14g2546 189 Pfam Ring finger domain 114 157 IPR001841 -
Ahy14g2546 189 CDD RING-H2_PA-TM-RING 114 157 - -
Ahy14g2546 189 SMART ring_2 115 156 IPR001841 -
Ahy14g2546 189 PANTHER RING-H2 FINGER PROTEIN ATL67 3 189 - -
Ahy14g2546 189 PANTHER RING-H2 FINGER PROTEIN ATL67 3 189 IPR044289 GO:0016567|GO:0016740
Ahy14g2546 189 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Ahy14g2546 189 SUPERFAMILY RING/U-box 105 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g2546 Ahy-Chr14 132297023 132298298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g2546 3 180 C3H Transcription Factor Family AT5G07040 39.444 2.48e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g2546 - - lja:Lj1g3v2807930.1 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy14g2546 14 132297023 132298298 Ahy4g2236 4 118570987 118572234 hybridization
Ahy14g2546 14 132297023 132298298 Ahy12g0191 12 3134162 3135089 PCT
Ahy14g2546 14 132297023 132298298 Ahy2g0219 2 2512750 2513931 PCT