Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy14g2400 ATGACCAGTTCGGTTCTCGCAACCTTGGTCCCCAGTTCCAATTACAATTCCAGACGATGGTGGTGGTGGGACTGGCCATCACTCTCTCAAAGGCCTTCACTGATTTCTCCTTGGCACACTACTCCCTCCATCACCACCACCACCACCGCCTTCTCCTCTCAGCAACAAGACATCGGCATCCCAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGGTCTAAGCAGCACAGAAACAGAAGCACTGACAATGGTCGACCACGTGATTCATCGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGACGCTGGAGGATCCTTCCGTTCTCTTAATTCTCAGGAGCTTGCTCCCGACACCAACTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTCGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAAGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTGTTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGGCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTAGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAGGAATCAAGGCTTGCCAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACTGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTTGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGCGCAAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCGTTACATGATGTCCCTTCTGCTGTTACCTTCTAG 1641 0.4601 MTSSVLATLVPSSNYNSRRWWWWDWPSLSQRPSLISPWHTTPSITTTTTAFSSQQQDIGIPTSIDSSSSSISPSFERLKTQKVKALVHRSKQHRNRSTDNGRPRDSSPNPRSRGGWGDAGGSFRSLNSQELAPDTNFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy14g2400 546 Gene3D - 362 538 IPR027417 -
Ahy14g2400 546 CDD SF2_C_DEAD 365 516 - -
Ahy14g2400 546 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 543 - -
Ahy14g2400 546 SMART helicmild6 416 506 IPR001650 -
Ahy14g2400 546 CDD DEADc 152 339 - -
Ahy14g2400 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 176 517 IPR027417 -
Ahy14g2400 546 SMART ultradead3 160 368 IPR014001 -
Ahy14g2400 546 Pfam Helicase conserved C-terminal domain 389 505 IPR001650 -
Ahy14g2400 546 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 353 IPR014001 -
Ahy14g2400 546 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 388 546 IPR001650 -
Ahy14g2400 546 MobiDBLite consensus disorder prediction 86 125 - -
Ahy14g2400 546 Gene3D - 124 353 IPR027417 -
Ahy14g2400 546 MobiDBLite consensus disorder prediction 48 73 - -
Ahy14g2400 546 Pfam DEAD/DEAH box helicase 166 339 IPR011545 GO:0003676|GO:0005524
Ahy14g2400 546 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 65 543 - -
Ahy14g2400 546 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy14g2400 Ahy-Chr14 127332584 127339041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy14g2400 141 514 Eukaryotic Initiation Factors Gene Family AT3G13920 28.267 2.20e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy14g2400 K13179 - gmx:100784377 721.85